Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2249 ATGATGATGAAGGGTTTGTCGGTGGATGAAAATATTTCAAATTTGACATCTGCTTCAAGTGAAATAAGTGCTTCTTCAGCAACCAAGAATGGAAAAGCTTCAACAAATCTAGAACCACAAACCAAAAGGAAGAGAAATCTTCCAGGCCACCCAGACCCTGAGGCAGAAGTGATAGCCTTGAGTCCTCAAACCCTATTGGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTCCAACTTCATAAAAGAGGACATAATTTGCCATGGAAGCTAAAGAAAAGAAATGTCAATGAAATTATAAGAAAGAAAGTATATGTTTGTCCAGAGACAACATGTGTTCACCATGACCCTTCAAGGGCACTTGGTGACTTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGTTCTAAGCGTTATGCAGTTCAGTCGGATTGGAAAGCTCATTCCAAAATTTGTGGCACTAAAGAGTATAAGTGTGACTGTGGAACCCTTTTCTCAAGAAGGGACAGTTTTATCACTCACAGAGCCTTCTGTGATGTTTTATCACAAGAGAGTGCATCAATTTCAGCAGTGAACCCTCTATTCTCTTCTCACTCCCAATTTCATCATCAAAGCCATAGTTTTCAACTACCATCACTAAAAAGAGAACAAGACTTCAATTTAAGACCAGAAATACCATCATGGTTACTCCCAACTCATTTGAACCATTATCATCAAATTCAAAACCCTAACCCTACAACTTTGTTTCCTAATTCTTTCAACTCCAACAATAATATTATTACTACTTCTTCTTCTCCTCACATGTCTGCCACTGCTTTGCTGCAAAAAGCATCACAAATTGGTGTAACAACAGTGAGTAAAACAGAACCTTGTAGACCCCACTTAATGCAAACTCACGTGCCTTCAGGAATGGTTATGCCTTCACGTGAAGAAATAGGGACTAATGGTTTTTCTCATGATTTGGCTTCTTATGGGAATAAAGCTTCTGATTGCTTTGAAGAATCTTCTTCTCTTTTGCATGATGTGATGTATGGCAGTGAGAGCTCACATTCACAATTTGAAGCTGTTACTGCTGCTATGAGTATGAGAGGAATGTTTGATACACAAAGAGATAATAATAATAATAACTTTGAGGAACAATATTCCCATTTTGGTAAAAGCAATATTATAAAGGGTGGTGGTGGTGCCAATGATGATGAAATGACAAGGGATTTTTTGAGTCTTGGTGCATTTTCTCAAAGAGACTTGTTCAATATATCTGGAATTGATGGACCTTTGAGTTCGCATGGTAAGCAAAATCAAATTCAAAATCAAACTCCTTGGTGA 1380 0.3783 MMMKGLSVDENISNLTSASSEISASSATKNGKASTNLEPQTKRKRNLPGHPDPEAEVIALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNVNEIIRKKVYVCPETTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESASISAVNPLFSSHSQFHHQSHSFQLPSLKREQDFNLRPEIPSWLLPTHLNHYHQIQNPNPTTLFPNSFNSNNNIITTSSSPHMSATALLQKASQIGVTTVSKTEPCRPHLMQTHVPSGMVMPSREEIGTNGFSHDLASYGNKASDCFEESSSLLHDVMYGSESSHSQFEAVTAAMSMRGMFDTQRDNNNNNFEEQYSHFGKSNIIKGGGGANDDEMTRDFLSLGAFSQRDLFNISGIDGPLSSHGKQNQIQNQTPW* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2249 459 SMART c2h2final6 71 93 IPR013087 -
Mal6g2249 459 SMART c2h2final6 148 168 IPR013087 -
Mal6g2249 459 SMART c2h2final6 113 143 IPR013087 -
Mal6g2249 459 Gene3D Classic Zinc Finger 67 94 - -
Mal6g2249 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Mal6g2249 459 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Mal6g2249 459 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Mal6g2249 459 MobiDBLite consensus disorder prediction 443 459 - -
Mal6g2249 459 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 16 438 - -
Mal6g2249 459 Gene3D Classic Zinc Finger 126 205 - -
Mal6g2249 459 MobiDBLite consensus disorder prediction 18 42 - -
Mal6g2249 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 438 - -
Mal6g2249 459 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Mal6g2249 459 MobiDBLite consensus disorder prediction 18 54 - -
Mal6g2249 459 MobiDBLite consensus disorder prediction 440 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2249 Mal-Chr6 52183754 52186186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2249 8 301 IDZ Gene Family AT1G55110 58.232 1.01e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal6g2249 zf-C2H2_jaz 4.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2249 K25870 - vvi:100257789 450.669