Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2220 ATGGGGTGGGGTCACCTTGGAAGAAATGGCTCAGATTCAGTTACCGACGCCGATGCAGCTCCGAGCACAAGCACGGCGGCGGAACCACGGCGGTTTCCATCGGCTGCTCAACCGGAAATGATGCGAGCTGCTGAAAAAGACGATCAATACGCCTCTTTCGTTTACGAAGCCTGCCGCGACGCGTTCCGTCATCTCTTCGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAACTTTTAGGGCAAATGCTTTATTATGTTCTTACAACTGGCTCTGGACAACAAACACTTGGTGAGGAATACTGTGATATTACTCAGGTTGCCGGACCTTATGGACTTCCTCCTACACCGGCCAGGCGTGCTTTGTTCATTGTATACCAGTCGGCTATTCCTTACATTGCAGAAAGAATTAGTTCTAGAATTGCTTCCCGAGGCATTATCCTTGCTGACTATGAGTCTGCTGAGAGTTATTATGGTGAAAATGCCCGCGGGAGTAGTAGTTCTCGGGTTTCTGCTGTGAGTGAACTTTCTCCTTTGTCTGCCTCAGGGCAGTCTACTTCAATTCTGACGAGGTTGAAGCATAAACTTGGTGGATTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGCGAGTTATTGCAGTTGCTTCTTCGTGCTAACCTCATGTTATTTTATTTTGAAGGTCTATATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTTTTCATTGGAAAAGCATCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTGCTGATTCAGCTTTGTGTAATAGCAGCTGAAGCGCTGCGGCGAAGAAATTTTACATCAATTGCTGGTTCAGTTCATCAAGCATCCTTTGCAGCCCAGCATACATCAGCAGGGCACGGTTTGCCTGTTCTAAATGAAGAAGGCACTTTGGCATCTCCAGAAGCTGACAAAGGAAGTTGGGTTTCTGGATCTTCATCTTCTGAGCATCATGCAACTAGTGGTGTTAGCAAATGCACACTTTGCCTGAGCGATCGTCAACACCCCACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATTACCGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGAACCCCTATAACACACTCAAGTTTAGTTTGTATTTATCATTCCGACTTCTAG 1200 0.4617 MGWGHLGRNGSDSVTDADAAPSTSTAAEPRRFPSAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQSAIPYIAERISSRIASRGIILADYESAESYYGENARGSSSSRVSAVSELSPLSASGQSTSILTRLKHKLGGFWLHMVQRWPTMLPFVRELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNFTSIAGSVHQASFAAQHTSAGHGLPVLNEEGTLASPEADKGSWVSGSSSSEHHATSGVSKCTLCLSDRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYHSDF* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2220 399 ProSiteProfiles Zinc finger RING-type profile. 345 383 IPR001841 -
Mal6g2220 399 CDD RING-HC_PEX10 344 383 - -
Mal6g2220 399 MobiDBLite consensus disorder prediction 1 41 - -
Mal6g2220 399 Pfam Pex2 / Pex12 amino terminal region 47 282 IPR006845 -
Mal6g2220 399 PANTHER PEROXISOME BIOGENESIS FACTOR 10 28 396 - -
Mal6g2220 399 SMART ring_2 345 382 IPR001841 -
Mal6g2220 399 MobiDBLite consensus disorder prediction 15 30 - -
Mal6g2220 399 SUPERFAMILY RING/U-box 344 388 - -
Mal6g2220 399 Pfam Ring finger domain 344 383 IPR001841 -
Mal6g2220 399 ProSitePatterns Zinc finger RING-type signature. 360 369 IPR017907 -
Mal6g2220 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 396 IPR013083 -
Mal6g2220 399 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 28 396 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2220 339 395 C3H Transcription Factor Family AT4G28270 32.877 6.16e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2220 K13346 - gmx:100783914 669.463