Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2219 ATGTATACCAAAACAAACCAATTGCACGTGTTCTGTTTTGAAGACATAAATATTGACTTGTGCATACCTTCGTGGGGAAATTTTTTTATGCCAACAAGACAGCCTCGCCGGAGAAGGTTTGTCCGGTCATCGGCGCCGGAGAAGGTATCAAAACATTTTATGAAAGCCATACTTCCCTCACCCATTCATGCCACTCAAATAAGAATTCCCGATGAATTTATCGCAAGATTTGGAAATGAACTCAAGAATGTTGCTACAATTACTGTTCCCGATGGTTGTATTTGGGAAATGGAACTGAAGAGATGCAATAACGGTGTTTTCTTTTGTAACAAATGGCAAGAGTTCGCAGAATACTATTCTATAGGATATGGTTGGTACCTGTCTTTCAATTATGAAGGAAATTCAAAGTTTAATGTTATTATATTTGATGTAACTTCTGTTGAGATTTGCTATCCATTCAAAACTCCAAGTACTAATGGAGAACCAAACAGAAAGTATCCTAGTCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGAGAGTCATGGGAAATGGAAAAAGGACAAAAGCATGTCTAAACATGCTTCTAAAAAAGCAGAGGAGGCTGCCAATGAATTCAACCCAAAAAACCCTTTTTTTCGATCAAAAATCGCTAAGGCAAATCGTACGAGTGTTACTTCTAAATTTGCTCAAAAGTATCTGCAGCCAAATGTTCCTACCAAGCTCCAAAATTCTCATGGACAACAATGGGAAGTTTCTTGTGTATTCTGTAATGCCGAATCATTATCAATGCAAATAGCGCGGGGATTTCCTAAATTTCAAAGGGCCAACAATCTGTCACATGGAGATTACTGTGTGTTTGAACTGATAAAAAAGAAGCCGGTTGTGCTAAAAGTCACAATGTTTCGCGTGATTGACTATCGCGATTAA 927 0.3819 MYTKTNQLHVFCFEDINIDLCIPSWGNFFMPTRQPRRRRFVRSSAPEKVSKHFMKAILPSPIHATQIRIPDEFIARFGNELKNVATITVPDGCIWEMELKRCNNGVFFCNKWQEFAEYYSIGYGWYLSFNYEGNSKFNVIIFDVTSVEICYPFKTPSTNGEPNRKYPSPRKRSKVETSESHGKWKKDKSMSKHASKKAEEAANEFNPKNPFFRSKIAKANRTSVTSKFAQKYLQPNVPTKLQNSHGQQWEVSCVFCNAESLSMQIARGFPKFQRANNLSHGDYCVFELIKKKPVVLKVTMFRVIDYRD* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2219 308 MobiDBLite consensus disorder prediction 158 202 - -
Mal6g2219 308 SUPERFAMILY DNA-binding pseudobarrel domain 205 302 IPR015300 -
Mal6g2219 308 Gene3D - 44 146 IPR015300 -
Mal6g2219 308 SMART B3_2 211 304 IPR003340 GO:0003677
Mal6g2219 308 SMART B3_2 53 145 IPR003340 GO:0003677
Mal6g2219 308 Gene3D - 190 307 IPR015300 -
Mal6g2219 308 SUPERFAMILY DNA-binding pseudobarrel domain 51 144 IPR015300 -
Mal6g2219 308 CDD B3_DNA 213 302 IPR003340 GO:0003677
Mal6g2219 308 MobiDBLite consensus disorder prediction 165 202 - -
Mal6g2219 308 ProSiteProfiles B3 DNA-binding domain profile. 241 304 IPR003340 GO:0003677
Mal6g2219 308 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 183 304 - -
Mal6g2219 308 PANTHER B3 DOMAIN-CONTAINING 183 304 - -
Mal6g2219 308 PANTHER B3 DOMAIN-CONTAINING 48 175 - -
Mal6g2219 308 CDD B3_DNA 51 143 IPR003340 GO:0003677
Mal6g2219 308 Pfam B3 DNA binding domain 53 143 IPR003340 GO:0003677
Mal6g2219 308 Pfam B3 DNA binding domain 214 302 IPR003340 GO:0003677
Mal6g2219 308 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 48 175 - -
Mal6g2219 308 ProSiteProfiles B3 DNA-binding domain profile. 52 145 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2219 Mal-Chr6 51684121 51687383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2219 169 305 B3 DNA Binding Superfamily AT3G18990 35.664 1.95e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal6g2219 B3 7.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2219 - - mtr:MTR_5g070440 374.785