Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2211 ATGGACGTAGTTGCTGCTCCTTACAATCCTCGTACTGTCGAAGAAGTCTTTCGAGATTTCAAAGGTCGTAGAGCTGCCTTAATTAAAGCCCTCACCACCGATGTTGATGAATTCTACCAGCAGTGTGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCGAGTGAGCAGTGGGAGGTGAATCTGCCAGCTGAGGAAGTGCCACCTGAGCTTCCAGAGCCAGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTGTCTTTGGTTGCCGTACACAGTGATGCTTGGTTGCTTTCTGTGGCTTTTTATTTCGGTGCTAGGTTTGGATTTGACAAGGCTGATAGGAAGCGACTATTTAATATGATAAATGATCTTCCAACAATCTTTGAAGTTGTTACAGGGTTGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCCAATAATAGCAGTACCAAATCCAAATCAAACTCTAAGCGAGGTTCTGAACCTCAGCCAAAGTTTTCAAAACCAATGGCAATGGCGATGCAAATGCAGTCAAAGGACGAGGTTGAGGATGAGGATGGTCTAGGTGTGGACGAGGAAGAAGAGGAAGAACACGGAGAGACTTTGTGTGGGGCATGTGGAGATAGCTATGCAGCTGATGAGTTCTGGATTTGCTGCGACATATGTGAGAAGTGGTTTCACGGAAAATGCGTGAAGATTACTCCGGCAAGGGCTGAGCATATCAAACAGTACAAATGTCCAGCTTGCAGCAACAAGAGAGCTCGCCCTTGA 795 0.4541 MDVVAAPYNPRTVEEVFRDFKGRRAALIKALTTDVDEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGLAKKQGKEKSSVSNNSSTKSKSNSKRGSEPQPKFSKPMAMAMQMQSKDEVEDEDGLGVDEEEEEEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACSNKRARP* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2211 264 CDD PHD_AL_plant 210 260 IPR044104 -
Mal6g2211 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 259 IPR013083 -
Mal6g2211 264 PANTHER CPG BINDING PROTEIN 7 264 IPR045104 GO:0006355|GO:0042393
Mal6g2211 264 SMART PHD_3 210 258 IPR001965 -
Mal6g2211 264 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 7 264 - -
Mal6g2211 264 MobiDBLite consensus disorder prediction 146 170 - -
Mal6g2211 264 MobiDBLite consensus disorder prediction 146 202 - -
Mal6g2211 264 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Mal6g2211 264 Pfam PHD-finger 211 260 IPR019787 -
Mal6g2211 264 ProSiteProfiles Zinc finger PHD-type profile. 208 260 IPR019787 -
Mal6g2211 264 SUPERFAMILY FYVE/PHD zinc finger 200 261 IPR011011 -
Mal6g2211 264 ProSitePatterns Zinc finger PHD-type signature. 211 257 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2211 Mal-Chr6 51530558 51534617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2211 1 263 Alfin-like Transcription Factor Family AT3G42790 73.485 2.57e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mal6g2211 Alfin 1.7e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2211 - - cam:101493315 443.351