Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2189 ATGAACACAAATATTATAACTAGTTCCAATCCTACTAATGTCACCACAAGTGATCACAACCCTAATAGTAGTAGTAGTAGTAATAATAAGATGTACAAAGGGGTGAGGAAGAGGAAATGGGGAAAATGGGTATCTGAAATTAGGCTTCCAAATAGCCGTGAGAGAATATGGTTAGGATCATATGATACTCAAGAGAAAGCTGCAAGAGCATTTGATGCAGCTCTCTATTGTCTACGTGGTCCTCATGCTAGCTTCAATTTCCCTAATACACCTCTTACCATCAATGTAGCTTTTTATGGTCACCAAACTCTTTCACCACAAGAGATTCAAGAAGTTGCTGCTAAGTTTGCAAATGATTCACCACCAATTGAGCTCACTCAAGAAGAAGATCAACAAGTACCTTCAGAATCACAAAATGATGCCAACTCCAATTCTTATTCATATCCTCTTTATGAGAGTCATGATTTGAGGAGGATGGATTGGACATTTGAGGATATGTTTGATGAGATGAATGGGGTTGCTAATTGCTCTGATTTTTATGGGCTAGAAAATATGCAATACTCAACTCAATCTTTTGAAGAGGATAATGGGGACCATTTTGAATGTGAGGATACTTTTTCTAACCATTCATTCCTTTGGAGTTGGAACTTTTGA 654 0.3746 MNTNIITSSNPTNVTTSDHNPNSSSSSNNKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGPHASFNFPNTPLTINVAFYGHQTLSPQEIQEVAAKFANDSPPIELTQEEDQQVPSESQNDANSNSYSYPLYESHDLRRMDWTFEDMFDEMNGVANCSDFYGLENMQYSTQSFEEDNGDHFECEDTFSNHSFLWSWNF* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2189 217 MobiDBLite consensus disorder prediction 1 30 - -
Mal6g2189 217 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Mal6g2189 217 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Mal6g2189 217 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Mal6g2189 217 MobiDBLite consensus disorder prediction 126 147 - -
Mal6g2189 217 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Mal6g2189 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 16 217 - -
Mal6g2189 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 217 - -
Mal6g2189 217 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Mal6g2189 217 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Mal6g2189 217 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Mal6g2189 217 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2189 Mal-Chr6 51133403 51134056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2189 32 179 AP2-EREBP Transcription Factor Family AT1G74930 52.903 8.20e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g2189 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2189 - - mtr:MTR_1g014800 344.739