Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2188 ATGACTTGTTCCAATCCTACCAGCAATGATCACAACACACCTTCTTCCAACAATAAACTTAGTAGTAGTAGTAGTAATAATAAGATGTACAAAGGGGTGAGGAAGAGAAAATGGGGAAAATGGGTATCTGAAATTAGGCTTCCAAATAGCCGTGAGAGAATATGGTTAGGATCATATGATACTCAAGAGAAAGCTGCAAGAGCATTTGATGCAGCTCTCTATTGTCTACGTGGTCCTCATGCTAGCTTCAATTTCCCTAATACACCTCTTACCATCAATGTAGCTTTTTATGGTCACCAAACTCTTTCACCACAAGAGATTCAAGAAGTTGCTGCTAAGTTTGCAAATGATTCACCACCAATTGAGCTCACTCAAGAAGAAGATCAACAAGTACCTTCAGAATCACAAAATGATGCCAACTCCAATTCTTATTCATATCCTCTTTATGAGAGTCATGATTTGAGGAGGATGGATTGGACATTTGAGGATATGTTTGATGACTTGAATGGGGTTGCTAATTGCTCTGATTTTTATGGGCTACAAAATATGCAATACTCAACTCAACTTTTTGAAGAGGATAATGTGGACCAAATTGAATGTGATGAAGATACTTTCTCTAATCATTCAACCCTTTGGAGTTGGAACTTTTGA 651 0.3763 MTCSNPTSNDHNTPSSNNKLSSSSSNNKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGPHASFNFPNTPLTINVAFYGHQTLSPQEIQEVAAKFANDSPPIELTQEEDQQVPSESQNDANSNSYSYPLYESHDLRRMDWTFEDMFDDLNGVANCSDFYGLQNMQYSTQLFEEDNVDQIECDEDTFSNHSTLWSWNF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2188 216 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Mal6g2188 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 216 - -
Mal6g2188 216 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Mal6g2188 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 15 216 - -
Mal6g2188 216 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Mal6g2188 216 MobiDBLite consensus disorder prediction 124 144 - -
Mal6g2188 216 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Mal6g2188 216 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Mal6g2188 216 MobiDBLite consensus disorder prediction 1 28 - -
Mal6g2188 216 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Mal6g2188 216 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Mal6g2188 216 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2188 Mal-Chr6 51083035 51083685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2188 30 177 AP2-EREBP Transcription Factor Family AT1G74930 53.548 6.50e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g2188 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2188 - - mtr:MTR_1g014800 352.058