Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2174 ATGACGACTTTGTCGCCTGGAGAGCCTTCACAGGGGGAGGGAGCCTCTGAACCAGTTCATGTTCCTATGTTTGATATTGAGGGAAACAATGATGATGCCATTGAGACAATAGAAAATGCAAGGAGAACGACTCATATGAGGACTCAAGATGACTTGAATATGGAAAATCAAAACATGCCAACCTATGATAGAGATCGCATGATCCCAATTAGCGGTATTTATATAGATTTTGAAGGCTATAATATGGCGGTTGAAAATGTCACTAAGTCACCTAGAACTGATAAGGAGGCTTCTAAGCCTAAGATTCAAGAAGTTGAGCCTCCAAAAGAGACCGTTTTGAAGTGCCCAATATGTGTGGCTCCTTTTGTGGAGGAAATGGCAACATTGTGTGGCCACATATTTTGCAAGAAGTGCATTGAAGCTGCAATAACTGAACATGGTAAATGCCCTATATGTATGGAAAATGTTATTCAAGAAGACATACTTAGGGTGTTTCTTCCATATTAA 507 0.4024 MTTLSPGEPSQGEGASEPVHVPMFDIEGNNDDAIETIENARRTTHMRTQDDLNMENQNMPTYDRDRMIPISGIYIDFEGYNMAVENVTKSPRTDKEASKPKIQEVEPPKETVLKCPICVAPFVEEMATLCGHIFCKKCIEAAITEHGKCPICMENVIQEDILRVFLPY* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2174 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 166 IPR013083 -
Mal6g2174 168 PANTHER RING ZINC FINGER-RELATED 31 167 - -
Mal6g2174 168 SMART ring_2 115 152 IPR001841 -
Mal6g2174 168 MobiDBLite consensus disorder prediction 1 21 - -
Mal6g2174 168 Pfam Zinc finger, C3HC4 type (RING finger) 114 152 - -
Mal6g2174 168 ProSiteProfiles Zinc finger RING-type profile. 115 152 IPR001841 -
Mal6g2174 168 SUPERFAMILY RING/U-box 114 157 - -
Mal6g2174 168 PANTHER ELFLESS, ISOFORM B 31 167 - -
Mal6g2174 168 ProSitePatterns Zinc finger RING-type signature. 130 139 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2174 Mal-Chr6 50896220 50900430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2174 23 167 C3H Transcription Factor Family AT5G48655 35.897 1.02e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2174 K22651 - gmx:100306616 113.62