Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2171 ATGGCTACTAAGCTATGTGATATTTGCAAGTCAACAAAGGCAACACTATTCTGCCGTTCTGATTCAGCTTTCCTCTGTTTAACTTGTGATTCCAACATCCACGCTGCCAACAAACTCGCCTCCCGCCACCACCGTGTCACACTCTGCCAAGTCTGCGAACAAGCACCGGCTCACGTCACCTGCAAAGCCGATGCCGCTAATCTCTGTATCTCCTGTGACCATGACATCCACTCCGCTAACCCCCTCGCTCGCCGCCACGAACGTGTACCTCTCACCACCTTCCACCACCACAATAACAGCCACCAACAACAATTCTTCTCTGAATCCGATCCCGAGGTCACCACCGAAGAAGCCGAAGCTGCTTCCTGGCTCCTCCAAACTCCTTCAAACCCTAAATTCCCCGATCTCAATTACTCTCACTACTCCTACCCCGAAATCGACGATTACGTCTCTGTCGATGCTAAAACAGACTCATCGGAGCATCATAGTCCCGGCACCACCGCAGACGGAGTCGTCCCGGTGCAGTCTCAGAGCAAAACCACCACCGAACACGAACACTACTCCGATATCAACATGGACTTCTCTAACACAAAACCTTTCACATACAATTTCAATCACACCGTATCGTCGCCGTCGATGGAGGTTGGAGTTGTACCAGACGGGAATGTGATAACGGATATATCGTACTGCGGTTACCGAACTACGGCGATGGAAACGGTGCCGATGACGGTGGCGGTTCCGATGACGGCGGTGGAAAGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAATCGAAGGTTCGAGAAGACGATTCGTTACGCTTCGAGAAAAGCTTATGCAGAAACTAGACCTAGAATTAAAGGAAGGTTCGCGAAACGTTCAGATTTGAATGTGAATTTAATTGCAGAGGATGAATACGGTGTCGTTCCTTCCTGTTGA 945 0.4984 MATKLCDICKSTKATLFCRSDSAFLCLTCDSNIHAANKLASRHHRVTLCQVCEQAPAHVTCKADAANLCISCDHDIHSANPLARRHERVPLTTFHHHNNSHQQQFFSESDPEVTTEEAEAASWLLQTPSNPKFPDLNYSHYSYPEIDDYVSVDAKTDSSEHHSPGTTADGVVPVQSQSKTTTEHEHYSDINMDFSNTKPFTYNFNHTVSSPSMEVGVVPDGNVITDISYCGYRTTAMETVPMTVAVPMTAVEREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNVNLIAEDEYGVVPSC* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2171 314 Pfam CCT motif 253 295 IPR010402 GO:0005515
Mal6g2171 314 SMART bboxneu5 49 91 IPR000315 GO:0008270
Mal6g2171 314 SMART bboxneu5 1 48 IPR000315 GO:0008270
Mal6g2171 314 ProSiteProfiles CCT domain profile. 253 295 IPR010402 GO:0005515
Mal6g2171 314 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Mal6g2171 314 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Mal6g2171 314 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4-LIKE 3 313 - -
Mal6g2171 314 CDD Bbox1_BBX-like 5 48 - -
Mal6g2171 314 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 313 IPR045281 GO:0009909
Mal6g2171 314 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Mal6g2171 314 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Mal6g2171 314 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2171 Mal-Chr6 50875164 50876195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2171 1 299 C2C2-CO-like Transcription Factor Family AT5G24930 53.026 1.08e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mal6g2171 zf-B_box 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2171 - - mtr:MTR_1g013450 577.015