Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2133 ATGGGGAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACCAATGGGCGTCAAGCAACTTATGCCAAAAGAAAGAATGGAATAATGAAGAAAGCTAGTGAATTATCTATATTGTGTGATATAGATATTATACTTCTTATGTTTTCTCCAGGTGGAAAACCTTCATTATGCACAGGGAGGAAAAGCAACTTTGAGGAGGTGATTGCAAAGTTTGCTCAACTAACCTCACAAGAAAGGGCAAAGAGGAAATTGGAGAGTCTTGAAGCACTAAAGAAAACATTTAAGAAGTTAGATCATGATGTGAATATACAAGACTTTTATGGTACAAGTAGTCAAACTGTTGAGGATTTGAATGATCAAGCCAAGCTATTACATAATCGTATCTCCGAAATTCACGAGAGATTAAGCCATTGGTCTGACATTGAAAAAATTAGTAGTGTGGATGAATTGGGACAGATGGAAAATTCACTCAAGGAGTCTCTTAATCAAATTCAAAATCATAAGGAAAATGTACAAAAGCAACAATTGGCATCACTGCAATGCAATAATCAGTTCAATGAATTGCAGCTTCCATACAAGATGAGTCACCAACAGCATCTTCAATCTCTATCATGGATGGTTAATGGTGACAGCCAGAATTTAGTGCTTCCTGAAGAGTCAAACTTGCTTCTCCACAAAGATGTAGAGGGCTCCACAAGCTCATCATTTGGAAGCTATGCTAGTTATCTTGGCTCAAGCACCAAAACAAACATGTCCAATTCTGGTCAAGAAAGTTGTATCATTAATGACATGAGCAATAGTACTACTGCTCCAGTGAGACTACAATTTAATGGACAAGTTCCATACATACCAAACAATTTCAACATAATGAATGATATGAAGCTCCAACCAGGGATGAATAATCCACATGAAAACCAAGTAGATAATTATCATCATGTGAATGCAAACTTTGAAGCACCTAAACAAGGGTTTGATCAGTCTAATCACCATGGTTGGACTTCTAATTCAGGTCCTTGTGCTGTTAATATCTTTGATGAACATTTGTATCCACAGCCAAATTTTCCACAAGTGCATTTTGGATTCACATAG 1089 0.3691 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGKPSLCTGRKSNFEEVIAKFAQLTSQERAKRKLESLEALKKTFKKLDHDVNIQDFYGTSSQTVEDLNDQAKLLHNRISEIHERLSHWSDIEKISSVDELGQMENSLKESLNQIQNHKENVQKQQLASLQCNNQFNELQLPYKMSHQQHLQSLSWMVNGDSQNLVLPEESNLLLHKDVEGSTSSSFGSYASYLGSSTKTNMSNSGQESCIINDMSNSTTAPVRLQFNGQVPYIPNNFNIMNDMKLQPGMNNPHENQVDNYHHVNANFEAPKQGFDQSNHHGWTSNSGPCAVNIFDEHLYPQPNFPQVHFGFT* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2133 362 CDD MADS 2 54 - -
Mal6g2133 362 Coils Coil 77 97 - -
Mal6g2133 362 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Mal6g2133 362 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal6g2133 362 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 352 - -
Mal6g2133 362 Coils Coil 114 134 - -
Mal6g2133 362 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 352 - -
Mal6g2133 362 Coils Coil 150 177 - -
Mal6g2133 362 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Mal6g2133 362 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Mal6g2133 362 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mal6g2133 362 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal6g2133 362 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal6g2133 362 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2133 Mal-Chr6 49681494 49686386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2133 1 264 Type I MADS-box Gene Family AT2G03060 54.745 4.29e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal6g2133 SRF-TF 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2133 - - lang:109356063 525.783