Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2117 ATGCAGAATCAAAGTATGAATTTTGTTCTATCCACTGATGCAAAACCAAGGCTCAAATGGACTCCTGAACTTCACCAAAGATTCATTGATGCAATTAATCAACTTGGAGGTGCAGCTAAAGCAACACCAAAGAGTATTATGAGGATAATGGAAATTCCAGGACTTACTTTGTACCATCTCAAGAGTCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGAAACCTGCTCTGACAACAAACAACAAGTATACACAGAAACCAAGAGCTGTGATGAACAATGCAGCAGAGAAATTGGTCTTGGGGACCAGAATCAAATCACTGAAAACATGGAGATATCTCATGCTCTAGAAATGCAAATGGAAGTAGAGAGGAAACTTAATGAACAAATTGAGGTACGGAAACATTTGCAGCTTCGAATCGAAGCTCAAGGAAAGTATTTACAATCAGTACTAATGAAGGCACAAGAAGCACTATCTGGACACAATTCTTCACCAATTGGTATAAAACTCACAAATGATGAACTCTCTCAGCTAGTTACCATGATCAACAATGCTAGTCCAAGTTCTCCAATCTCAGAACTAACAGAATCAAGAGGATTGAGTTTAAACTCTGGTAAGAGGAAACAGGACAATGGAACTTCTTTGTGTTCATTGGAAAGTTCTTTGACATCTTCTGAAAGCTCAGAGAGAAAGGAAGAGAAACATGCATTAGAAGATATAGGAGACTTCAAAAATTCCAATACTATTTCACCTGAATTGCCACTAATGGCCATGCAGTCAGAAGAGAAATCAGTGTCGTGTCCAATATCTGTGTGTGTGATTCGTAGTGATGATTCAAATAATGAAGCTAATGGGAGAAAAAGAAATGAAGAAACTAAATTTGATGATAGCTATGTTGAGAATTGTTCATACAGGAAAAGATGTGGCAAGAAGTTGAAGAAAGCTAAGTTGTCAGAAAAGTTTGACTTGAATAGCAAATGTCAGAATGACATGGAATCAACAAGTTCAAAAATGTTATTAGACTTGAATTGCAGTTTAAACTTTTGTGAACCATGA 1062 0.3663 MQNQSMNFVLSTDAKPRLKWTPELHQRFIDAINQLGGAAKATPKSIMRIMEIPGLTLYHLKSHLQKYRLGKSQQLETCSDNKQQVYTETKSCDEQCSREIGLGDQNQITENMEISHALEMQMEVERKLNEQIEVRKHLQLRIEAQGKYLQSVLMKAQEALSGHNSSPIGIKLTNDELSQLVTMINNASPSSPISELTESRGLSLNSGKRKQDNGTSLCSLESSLTSSESSERKEEKHALEDIGDFKNSNTISPELPLMAMQSEEKSVSCPISVCVIRSDDSNNEANGRKRNEETKFDDSYVENCSYRKRCGKKLKKAKLSEKFDLNSKCQNDMESTSSKMLLDLNCSLNFCEP* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2117 353 MobiDBLite consensus disorder prediction 227 243 - -
Mal6g2117 353 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 15 70 IPR006447 GO:0003677
Mal6g2117 353 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 348 - -
Mal6g2117 353 MobiDBLite consensus disorder prediction 187 247 - -
Mal6g2117 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 348 IPR044848 GO:0003700
Mal6g2117 353 MobiDBLite consensus disorder prediction 187 226 - -
Mal6g2117 353 Pfam Myb-like DNA-binding domain 17 68 IPR001005 -
Mal6g2117 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 72 IPR017930 -
Mal6g2117 353 Gene3D - 14 72 - -
Mal6g2117 353 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Mal6g2117 353 Pfam MYB-CC type transfactor, LHEQLE motif 112 158 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2117 Mal-Chr6 49071361 49073225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2117 6 263 G2-like Transcription Factor Family AT1G69580 48.507 2.09e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mal6g2117 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2117 - - mtr:MTR_5g041350 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2117 6 49071361 49073225 Mal6g2117 6 49071361 49073225 ECH