Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2115 ATGGCTTCAGACGCTGAACTCTCTGAAATTTCTTCTCTGTTCGAAAGAATGATGCGAAACAGAGACATGTCTCTGTTCTTACCCTTTATGTTAAGCCTTTCACAATCTTCTTCTTCAAGAAACACCACCGACCCAGATCAAGAATCTGAAAATACCGAAGATTCCACCCTTCAAAGAATCATCTTGGTGAATCCATTCACACAGGGCATGGTAGTAATCGATGGAGCTTCAAGTATTGAAGAGCTCTTCAACAACCTTGGAAGTGCTACGAAGAATGGTCCACCACCAGCTACAAAGGAGTCTATTGAGGCTATGGAGAAGGTTGAGATTGGAGAAGGTGGTGGTGGTGAGTGTGTTGTTTGTTTGGAGGAATTTGAGGTTGGTGGGGTTGTGAAGGAGATGCCTTGTAAGCATAGGTTTCATGGAAAGTGTATTGAGAAGTGGTTGGGGATTCATGGTTCTTGTCCTGTTTGTAGGTATCAGATGCCTGTTGATGACAAAGATGGTGGAAGGAAAATTGATGGAGAAGATGGTGGTGAGAGGAGAAGGGTTGGTGGTGGTGGTGAAGTTTGGGTTAGTTTTTCTATTAATAGGAGTAGGAGAAATCAAGATCAAGCTTCAAGCCCTAGAGATAGTGATGAGGTTGAAAATTGA 654 0.4297 MASDAELSEISSLFERMMRNRDMSLFLPFMLSLSQSSSSRNTTDPDQESENTEDSTLQRIILVNPFTQGMVVIDGASSIEELFNNLGSATKNGPPPATKESIEAMEKVEIGEGGGGECVVCLEEFEVGGVVKEMPCKHRFHGKCIEKWLGIHGSCPVCRYQMPVDDKDGGRKIDGEDGGERRRVGGGGEVWVSFSINRSRRNQDQASSPRDSDEVEN* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2115 217 PANTHER - 8 170 - -
Mal6g2115 217 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Mal6g2115 217 Pfam Ring finger domain 117 159 IPR001841 -
Mal6g2115 217 CDD RING-H2_PA-TM-RING 122 159 - -
Mal6g2115 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 165 IPR013083 -
Mal6g2115 217 SUPERFAMILY RING/U-box 117 164 - -
Mal6g2115 217 SMART ring_2 118 158 IPR001841 -
Mal6g2115 217 MobiDBLite consensus disorder prediction 35 56 - -
Mal6g2115 217 MobiDBLite consensus disorder prediction 166 217 - -
Mal6g2115 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 170 - -
Mal6g2115 217 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2115 Mal-Chr6 49063492 49064145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2115 1 217 C3H Transcription Factor Family AT1G26800 50.222 3.77e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2115 - - lang:109356689 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2115 6 49063492 49064145 Mal6g2115 6 49063492 49064145 ECH