Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2089 ATGTCTCCTCCGCAACCCAGCCGTGTTGATCCAAAAATCTGGCAGTGCTGTGCCGGAGCTTCTGTCAAAATCCCAAAACTACATTCACATGTTTATTACTTCCCATTAGGTCACTTAGAACATGTCTGTCCATCTCCAAACCCTAACACACTCTCCCTTCTCAATCGTTCCTGTCCAATCATTCCATGCTACATCTCCGCCGTTGATTTACTCGCTGACCCTCATACCGACGAAGTCTTCGTCAAATTACTCCTCACTCCAGTCACTAAGGACAGTGTTCACGAACCTCAGGAGGTTCGTGAACACCAAGATGACGGCAATGAGGTTGTTTCCTCTGCCAAGACTCTCACCCAATCTGATGCTAACAATGGTGGTGCATTCTCCGTACCATGGGAATGCGCTAAATTAATCTTCCCGCCGCTTGACCTAACAACCGAAAAGCCGTCTCAAGAACTCTCCATCACTGACATTCATGGCGAAGTCTGGAAGCTTCGCCATGTCTACCGTGGAACTCCCTTGCGACACCTGATCACCACCGGTTGGAGTAAGTTCGTTGACAAGAAGAAATTCGTCAGCGGCGATTCCTTAGTTTTCATGAAAACTTCAAAAGGAAGTATCTTTGTTGGATTCCGCCGGCATAAGTCTGGTGCTGCCGCTAAGTTAACGGAAAAATCGTTTACGGAGGCAGTAGAATTGGCGGAGAAGAACATGGCTTTTGAAGTTATGTATTATCCGAGAGGTGAAGGTTGGTGTAATTTTGTGGTAGATGCTAAGCTTGTGGAGGATGCAGTGAAGATCAATTGGAATCCTGGAATGAGAATTAAGCTTTCTTTCAATAATGACGATTCTTCAAAGAGATGCTCACCTTTTCATGGGACAATATCTGCTCTCTCTGCTCCTACTCGTCCATGGCGCATGCTTCAGGTTAATTGGGATGAACATAAAGTCTCGCAGATTCCAGAGCGAGTTAGTCCTTGGGAGGTTGAACTTATTTCCAACATACTTGCACCGCATCTACCGTCTCCCCCAACAAAAAAGCATAGAACTGCTCAAGATTCTACCTTATTCACTAATATAGTGGCAAACTCCATCCCAAATATAGATTTTCAATCTTCAGGAATGAGATCCATCGAACAAACATTGTTGAATAATGATGCTTTTCGTGATGGCATGCAGGGAGCCAGGCACAATCTTACTACTTTCACATCAAGTACTTCCAACTTTTTGAATGGTAAAAGCAATGGTATCATTGGGAATAATTCTATCGCGGTGTCGAGTAATGTGTCAACCGAGCAAAACACAAGCAGTGTTCGACCAATTAAGTTATTTGGTAAAATCATATATCCTAATGGAAGCCATTTGGAGAACTCAGATATGAAGCGAGATGATGACAGTAAGGGCAGCAATAAAATTGATGTTGCTGACTAA 1428 0.4384 MSPPQPSRVDPKIWQCCAGASVKIPKLHSHVYYFPLGHLEHVCPSPNPNTLSLLNRSCPIIPCYISAVDLLADPHTDEVFVKLLLTPVTKDSVHEPQEVREHQDDGNEVVSSAKTLTQSDANNGGAFSVPWECAKLIFPPLDLTTEKPSQELSITDIHGEVWKLRHVYRGTPLRHLITTGWSKFVDKKKFVSGDSLVFMKTSKGSIFVGFRRHKSGAAAKLTEKSFTEAVELAEKNMAFEVMYYPRGEGWCNFVVDAKLVEDAVKINWNPGMRIKLSFNNDDSSKRCSPFHGTISALSAPTRPWRMLQVNWDEHKVSQIPERVSPWEVELISNILAPHLPSPPTKKHRTAQDSTLFTNIVANSIPNIDFQSSGMRSIEQTLLNNDAFRDGMQGARHNLTTFTSSTSNFLNGKSNGIIGNNSIAVSSNVSTEQNTSSVRPIKLFGKIIYPNGSHLENSDMKRDDDSKGSNKIDVAD* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2089 475 CDD B3_DNA 114 212 IPR003340 GO:0003677
Mal6g2089 475 MobiDBLite consensus disorder prediction 455 475 - -
Mal6g2089 475 Pfam B3 DNA binding domain 114 213 IPR003340 GO:0003677
Mal6g2089 475 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 214 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal6g2089 475 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 220 434 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal6g2089 475 Gene3D - 268 335 - -
Mal6g2089 475 SMART B3_2 112 214 IPR003340 GO:0003677
Mal6g2089 475 PANTHER AUXIN RESPONSE FACTOR 5 214 - -
Mal6g2089 475 PANTHER AUXIN RESPONSE FACTOR 220 434 - -
Mal6g2089 475 Gene3D - 111 214 IPR015300 -
Mal6g2089 475 SUPERFAMILY DNA-binding pseudobarrel domain 111 212 IPR015300 -
Mal6g2089 475 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Mal6g2089 475 MobiDBLite consensus disorder prediction 453 475 - -
Mal6g2089 475 Pfam Auxin response factor 229 308 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2089 Mal-Chr6 48463645 48465742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2089 1 447 B3 DNA Binding Superfamily AT1G77850 38.104 7.13e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal6g2089 B3 2.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2089 - - mtr:MTR_5g040880 603.594