Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2085 ATGTTGAATGTTGATGTAATTGGTAACAAGAAAAGGAAAAGATGTGGGAGAGTTTTTAGGTTCAAGAATTTTGGAGAACAAGGGTACCCGGTTATGTTTAATGGGGCATCATTTCGTGAGAATGTTAATGCTTTACTTGAATATGCTAATTTAGAGAGTAAATTAAATATGGAAATGCCAATGTGGTCTTTTCAACTTGAATTGCATCATCATCCACCTTTGCATATCTTGTTATTTGTGATTGAAGAATCAATTGAGGCAGCTCTGAATCGTCATTGCAACCATTGTCAATATGTTGGTTGGGGCAACCATTTCATTTGCAATAAGAAGTATCATTTCCTATTACCCTCAAAGGAGACACTAAGTAGCTGTACGAGCTGTGAAAGTTGCTGTGATTCAATTGGTACAATAATAAATAATGGTAAGTCCAAATTAATAGAATTAAAGGGACATATGATGCATGGTGTATTTCACTCTAATGGATTTGGACATTTGCTATGTGTCAATGGGTTGGAAACGGGTTCAAATTTGGGTGGGAACCAAATTATGGAGTTTTGGAATCGTTTGTGCAATGGATTGCAAGCAAGGAAAGTGAGTTTGAACGACACATCACAAAAAAGAGGCATGGAATTGAGACTTGTGAATGGAATAGCATATAGTGAGCCATGGTTTGGTCGTTGGGGATACAAATTTGGACGAGGATGTTTTGGTGTAACACAATCAATGTACCAAAAAGCCATAGAAGCAATAAGAAGCATGCCACTATACTTACTTACACATCACATTACAAATTCCAATCATGAAATCCCATTAATCTTCTCAAGGTACCAAACACTTTCTGAGCACTCTATTATAACCCTTGGTGACTTATTTCATTACATGTTAGAGCTCAAGTCGCGCCTTCCCCGCGAAACATGCATTGGTTCCTACAATACAAGTGCCTTAGTCGAAACAAATTGTCGTTGGTCCCCTAAAAGGATCGAAATGGCAACAAGGGTCATTGTTGAGGCCTTAAAAAGAACGGAGTTCAGATGGATTTCGAGACAAGAAGTGAGGGATGCCGCACGCGCTTACATTGGGGACACTGGTTTGTTGGATTTTGTTTTGAAGTCACTAGGTAACCATGTTGTTGGAAACTACTTGGTTCGTCGAAGCTTGAATCCGGTTACCAAAGTTTTGGAGTATTGTTTAGAAGATATTTCTAATGTTTACCCTTGTCATGAAGGGTTGGTTATGAGTAGTAGTAGTAGTAATAAAGTTAAGGACAAGTACAAGATCACAAGGGGTCAACTTATGAAGGACATGATTTGTTTGTATAAGTATATACTTATTGACACAAAACCAATTATAGGGTCAGAATTTCTTTCAGCTATACCATTGGCAGCTAGGATAATTCTTGACACTAAATATCTTATCAAAGACTATGGAGAGGTTCCTTTGCATGTTGAGATAGGATCAGAAGGAAAATTCAATCTTTATTGTACAATTTTGTTGAGGAATGTTAACAATGTAGGGCATGATCATGAGTATTATTTGAACAATGATATGCCAATTCCAATTCCAATGCCACCTTATGAATGTATCACATTGAAAAGTTGTGCTACAATTAATGACTTAAAGCTAGAAGTTGAAAGGAATTTTAGGGAAATCTATTGGGGGTTAAGGAGTTTTGTGGTGGAATCAAATGAGAATTTGATAAATGCAAAAGGAAATGAAATGGTTTATGGTATGATTGAAGTGGGTGGAAAACTTGTACTTGAGGGTTGGCATGGTGGTGACATGATTGAGCAAATATGTGAAAGGGATCCAAAGAAGGGAATTGTGGAGTGCATTTGTGGAACTAAAGAAGATGATGGTGAAAGAATGGTGTCTTGTGATATTTGTGAAATATGGCAACATACTAGGTGTGTTCGAATTCCTAATGATGAAGAAGTTCCTCATATTTTTCTATGCAAAAGGTGTGAGCAAGAAATTGTTCTTTTCCCTTCTTTGCCATAG 1998 0.3704 MLNVDVIGNKKRKRCGRVFRFKNFGEQGYPVMFNGASFRENVNALLEYANLESKLNMEMPMWSFQLELHHHPPLHILLFVIEESIEAALNRHCNHCQYVGWGNHFICNKKYHFLLPSKETLSSCTSCESCCDSIGTIINNGKSKLIELKGHMMHGVFHSNGFGHLLCVNGLETGSNLGGNQIMEFWNRLCNGLQARKVSLNDTSQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLLTHHITNSNHEIPLIFSRYQTLSEHSIITLGDLFHYMLELKSRLPRETCIGSYNTSALVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNVYPCHEGLVMSSSSSNKVKDKYKITRGQLMKDMICLYKYILIDTKPIIGSEFLSAIPLAARIILDTKYLIKDYGEVPLHVEIGSEGKFNLYCTILLRNVNNVGHDHEYYLNNDMPIPIPMPPYECITLKSCATINDLKLEVERNFREIYWGLRSFVVESNENLINAKGNEMVYGMIEVGGKLVLEGWHGGDMIEQICERDPKKGIVECICGTKEDDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRCEQEIVLFPSLP* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2085 665 ProSiteProfiles Zinc finger PHD-type profile. 607 657 IPR019787 -
Mal6g2085 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 660 IPR013083 -
Mal6g2085 665 SMART PHD_3 609 655 IPR001965 -
Mal6g2085 665 SUPERFAMILY FYVE/PHD zinc finger 604 657 IPR011011 -
Mal6g2085 665 Pfam PHD-finger 610 656 IPR019787 -
Mal6g2085 665 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 665 - -
Mal6g2085 665 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 665 - -
Mal6g2085 665 CDD PHD_MMD1_like 609 654 - -
Mal6g2085 665 ProSitePatterns Zinc finger PHD-type signature. 610 654 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2085 Mal-Chr6 48432562 48436184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2085 10 665 PHD Transcription Factor Family AT5G22260 51.890 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal6g2085 PHD 1.7e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2085 - - mtr:MTR_5g040700 1271.53