Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2046 ATGACTAGCAACAGGGAAAATAAGCATACTCTCTCTGCTTCTACTATTCGTTTCTTTAGAGTTATTACCACAAAAGTTCTTCAAGATGGAAAGCTTATGATGCCAAACGGTTTTACTAGGAACCATATGAGTGACATGTCAAACCCATTGTTTCTCAAGACTCCAGATGGTAAAATATGGGAAATGTTTACGACTAAAAGTAATGGAGATCTTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACACATTATTCACTGGATCATGGGCACATGGTATTGTTTCAATATGAAGAAAACTCTCATTTTGTGGTGCATATATTTGGCAAGTGTACCCTTGAAATTGAATATCCTTTCCATGACAATCAAAATGAACAAAACGATTTTGACCAAATTAGTGATGACGACTCTGTTGAAATTTTCGATAAGCCACCTTCACGCAAGAAGAATACTAGACAAAAATCACCAATTATGTGTCCTCAACCACATAAGAAATTGAGAAGTGACACAAGTGAAGGTGTTGGAACAAGCTTGCCTAAGCATCATGTCCAAACTAGTGAGGATACGAGTGGTAGCACTGAATGCCGAAAAGTGAAGCACGAGTACGAGCAAGAACAAGAGCAGGAGCAGGAGCAGGAGCAGTTAACTTCTAAAATTAATGAAGCATTAAGTAGAGCTAGAAGCTTCAAATCAAAAAATCCATCTTTTAAGATTGTCATGAAGTCTTCATATCTTTATAGCCATTTCTTGTATGTCCCATTACAATTTGCTAACAATCATATGAAGAAAGAGCAAAGTGACATTCTTCTTCAGCTCATGGATGGGAGAGCTTGGGATACTAAATATTGTTCTGGAAAAATTAAAGGTGGATGGAAGAAATTTGTAGCAGACAATAAGTTTAAAGTTGGTGATGTGTGTATTTTTGAATTGACCAAAAGCCAATCCCTTACTTTGAAAGTACTAATATTTAGACTTGAGGAAGAACCACACTCCCCTCCACTTCAAGTTCAAAGAGACAAATACTTCTCGGATGTTGAAAGTGAAACTATTATGACAAATAAAGTTGAGAAGGCAACCCAAAAAACTTCATTGCGGTCAAAGGCCTATTTCTTTACGAATGAAGCTGAGAAATTCAACTCCAAATATCCATTTTTCAAGGTCAATATTATGCCAAATCAACGGGGGCATTCTAGATTGCATGTACCAATTTCCTTCATTAGAGAGTACTTGGATGAGAAGGAGCAGACTTTGATGTTAAAGTTTGGGAGGAAATTGTGGCCTGTAAAGTTGCTATGTTATTCCAACATGAAATCAGGCCAGTTTTCAAGAGGTTGGACCCAATTTTGGGAAGAAAATAAATTGAAAGGTGGAGATGTATGTGTCTTTGAGCTCATCAAGAGAAAAAATGTTGTGCTTAATGTTCATATTTTTAGAGGCAATTGA 1440 0.366 MTSNRENKHTLSASTIRFFRVITTKVLQDGKLMMPNGFTRNHMSDMSNPLFLKTPDGKIWEMFTTKSNGDLWFQKGWKEFATHYSLDHGHMVLFQYEENSHFVVHIFGKCTLEIEYPFHDNQNEQNDFDQISDDDSVEIFDKPPSRKKNTRQKSPIMCPQPHKKLRSDTSEGVGTSLPKHHVQTSEDTSGSTECRKVKHEYEQEQEQEQEQEQLTSKINEALSRARSFKSKNPSFKIVMKSSYLYSHFLYVPLQFANNHMKKEQSDILLQLMDGRAWDTKYCSGKIKGGWKKFVADNKFKVGDVCIFELTKSQSLTLKVLIFRLEEEPHSPPLQVQRDKYFSDVESETIMTNKVEKATQKTSLRSKAYFFTNEAEKFNSKYPFFKVNIMPNQRGHSRLHVPISFIREYLDEKEQTLMLKFGRKLWPVKLLCYSNMKSGQFSRGWTQFWEENKLKGGDVCVFELIKRKNVVLNVHIFRGN* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2046 479 Coils Coil 194 224 - -
Mal6g2046 479 PANTHER B3 DOMAIN-CONTAINING 11 324 - -
Mal6g2046 479 PANTHER B3 DOMAIN-CONTAINING 343 477 - -
Mal6g2046 479 CDD B3_DNA 383 477 IPR003340 GO:0003677
Mal6g2046 479 Gene3D - 364 479 IPR015300 -
Mal6g2046 479 Gene3D - 214 326 IPR015300 -
Mal6g2046 479 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 324 - -
Mal6g2046 479 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 343 477 - -
Mal6g2046 479 MobiDBLite consensus disorder prediction 191 213 - -
Mal6g2046 479 MobiDBLite consensus disorder prediction 170 190 - -
Mal6g2046 479 CDD B3_DNA 235 323 IPR003340 GO:0003677
Mal6g2046 479 SUPERFAMILY DNA-binding pseudobarrel domain 14 108 IPR015300 -
Mal6g2046 479 ProSiteProfiles B3 DNA-binding domain profile. 234 325 IPR003340 GO:0003677
Mal6g2046 479 SMART B3_2 235 325 IPR003340 GO:0003677
Mal6g2046 479 SMART B3_2 18 110 IPR003340 GO:0003677
Mal6g2046 479 SMART B3_2 383 479 IPR003340 GO:0003677
Mal6g2046 479 Gene3D - 11 110 IPR015300 -
Mal6g2046 479 Pfam B3 DNA binding domain 22 108 IPR003340 GO:0003677
Mal6g2046 479 Pfam B3 DNA binding domain 235 323 IPR003340 GO:0003677
Mal6g2046 479 Pfam B3 DNA binding domain 383 478 IPR003340 GO:0003677
Mal6g2046 479 ProSiteProfiles B3 DNA-binding domain profile. 383 479 IPR003340 GO:0003677
Mal6g2046 479 SUPERFAMILY DNA-binding pseudobarrel domain 228 324 IPR015300 -
Mal6g2046 479 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Mal6g2046 479 SUPERFAMILY DNA-binding pseudobarrel domain 377 477 IPR015300 -
Mal6g2046 479 MobiDBLite consensus disorder prediction 135 214 - -
Mal6g2046 479 CDD B3_DNA 17 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2046 Mal-Chr6 46781825 46784171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2046 372 479 B3 DNA Binding Superfamily AT3G18990 37.273 4.72e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal6g2046 B3 6.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2046 - - mtr:MTR_1g035460 609.372