Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1965 ATGGACCAACAAACACAAGAAGAAGACTTAACCAATACTAACCAAAACCTCACAACAAAAACAACCACTTTCATTACAAAAAATGGAACCAACTCTCACCAACATCATCATCATAATCACTACTATAATCAAAATCAAAATCATCAGCAACATCATCAAAATCATCTTCAACAATACACAACTCAACTTGGTTTCTGCAACAACAACAAGTATCAAAGATATTACCCTGCTCTTCTTCCTTTACCTTCACTTCAACAACTACCTTTGATTCCACCTTTCCCTCAAAATCAAACCATCAAATTCAAAACCCATTTGCATAAACTTCCATGCAAACTCAATAGTTCTCCTTCATCAGAATACAATCTTTCTCAGCTCTCACTTGATCCTGCTCCAAAGGAACTTCAAAAGCAAACTAAATCACCCTTTAAAGAAGATAATGGGAAAAGGCTTATTTCAACAAGAAAGCCACAAGAAGTGATTGTTGCAAGAAGGCCAGACACAGGTGGACAAGAAGGTCCTGTAATTTCTCTCCTTGCCAACCATTTTTTGGTGAAGTTTGATTCATCACAAAAAATATATCATTACAATGTTGAAATCACTCCTCACCCCTCTAAGGATGTTGCTAGAGAAATCAAACATAAATTGGTAAATAACAATTCCGATATTTTATCGGGCGCTCTGCCAGCGTATGATGGGAGGAAGAATCTTTATAGTCCAATTGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGTCTGCCGATACCAACTAGCAAATCGTCATCACTTTATGGAGAAATGAATGGTACGAATGAGAAGCGTGAACATCATAAACTTTTTCGGATAAATATCAAACTAGTCTCGAAGATTGACGGGAAGGGGTTGACTAACTACTTGAGCAAAGAAGGCGATGAAGGGATCCCACTTCCGCAGGATTATTTACATGCTTTGGATGTAGTTTTGAGGGAAAGTCCAACCGAGAAATGTATACCTGTTGGAAGGTCATTCTATTCGAGTTCAATGGGAAGAAGCAAAGATATTGGTGGAGGAGCTGTGGGATTAAGAGGCTTCTTTCAGAGTCTTAGACCAACACAACAAGGACTTGCTCTCAATGTGGATTTCTCAGTAACTGCTTTCCATGAGAGTATAGGAGTAATTCCGTATTTGCAGAAACGTCTCGAGTTTCTTAGAGACCTTTCTCAAAGGAAGACAACTGAGCTAACTTGTGAAGAAAGAAAGGAAGTGGAGAAAGCGTTGAAGAACATCAGAGTCTTTGTTTGCCATAGAGAAACTGTTCAGAGGTACCGTGTCTACGGCTTAACTGAGGAGGCAACTGAAAATCTTTGGTTTCCTGATAGAGATGGAAAGAATCTGAGGCTTGTGAGTTACTTTAAAGATCACTATAACTATGATATACAATTCAGAAAGTTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTCCCTATGGAGCTTTGTGTGATCTGTGAAGGACAGAAGTTCCTTGGGAAACTGTCGGATGATCAGACAGCAAAAATACTCAAGATGGGCTGTCAACGACCGGGAGAACGAAAAGCTATCATTGAAGGAGTCGTGAGAGGAAACGTTGGTCCTACCAGTGGTGACCAGGAAAAGGAATTCAAACTCCAAGTTTCAAGAGAGATGACAAGGTTGACTGGGAGAATTCTCTACCCTCCTAAACTAAAGCTTGGAGAAGGAGGTCATGTGAGAAACCTGACTCCTTCACGTCACGATCGCCAGTGGAACCTTCTAGATGGCCATGTATTTGAAGGAACTACCATTGACAGGTGGGCACTAATAAGTTTCGGAGGCACACCTGAGCAAAAGTCGCATATCCCAAGATTCATAAACCAGTTAACTCAAAGATGTGAACAATTAGGCATTTTTCTTAACAAGAACACCGTTATCAGTCCACAGTTTGAATCAATCCAAGTTCTTAACAATGTGACACTTTTGGAATCTAAGCTCAATAGAATCCAAAGGATAGCCTCAAATAATCTACAACTTCTTATTTGTATAATGGAGAAAAAACACAAAGGGTATGGAGACTTGAAGCGAATTGCCGAGACAAGTGTTGGTGTTGTAAGCCAGTGCTGCTTGTATCCGAATCTCATCAAATTAAGCTCACAGTTTTTGGCTAATTTGGCCCTCAAGATCAATGCTAAAGTTGGTGGATGCACGGTTGCTTTGTACAACTCGCTTCCTTCTCAGTTACCACGTCTTTTCAACATCGATGAGCCGGTGATGTTCATGGGAGCTGACGTAACACATCCTCATCCTCTCGACGATTCAAGTCCATCTGTCGCTGCTGTTGTTGGTAGCATGAATTGGCCAACAGCAAACAAATACATTTCAAGAATAAGGTCTCAAACACATAGACAAGAAATTATCGCAGATCTCGGCGCAATGGTTGGAGAATTGCTTGAGGATTTTTATCAAGAAGTTGAAAAACTCCCTAACCGAATAATTTTCTTCCGAGACGGTGTTAGCGAAACTCAGTTTTACAAAGTGCTGCAAGAGGAACTACAATCAATAAAACAAGCATGTTCATCAAGGTTTCATGGTTATAAACCTTTGATTACTTTTGTAGTTGTGCAAAAGAGGCATCACACAAGGTTGTTTCCTGCTGACACCGATCAATCTTCGACACACAACAATTTTCATTTTCAACATGAAAATATTCCACCAGGGACTGTGGTTGATTCTGTGATTACTCATCCAAAGGAATTTGATTTCTATCTATGTAGCCATTGGGGTGTGAAGGGAACAAGTAGGCCAACTCATTACCATGTTTTGTGGGATGAAAATCAGTTCACTTCAGATGAATTGCAGAAGCTGGTTTACAATTTGTGCTTTACTTTTGTTAGGTGTACTAAGCCAATTTCATTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGTAGACTCTACCTTGAGAGATCAGAGTCATTAGGTTTGTTCAGAAGTGCTTCTTCATTATCAAGAGCTGCTCCTCCAAAGACACCACCTCTTCCTAAACTTAGTGAAAACATCAAGAAGCTTATGTTTTATTGCTAA 3093 0.3967 MDQQTQEEDLTNTNQNLTTKTTTFITKNGTNSHQHHHHNHYYNQNQNHQQHHQNHLQQYTTQLGFCNNNKYQRYYPALLPLPSLQQLPLIPPFPQNQTIKFKTHLHKLPCKLNSSPSSEYNLSQLSLDPAPKELQKQTKSPFKEDNGKRLISTRKPQEVIVARRPDTGGQEGPVISLLANHFLVKFDSSQKIYHYNVEITPHPSKDVAREIKHKLVNNNSDILSGALPAYDGRKNLYSPIEFQNDKLEFYISLPIPTSKSSSLYGEMNGTNEKREHHKLFRINIKLVSKIDGKGLTNYLSKEGDEGIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLSQRKTTELTCEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEEATENLWFPDRDGKNLRLVSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPGERKAIIEGVVRGNVGPTSGDQEKEFKLQVSREMTRLTGRILYPPKLKLGEGGHVRNLTPSRHDRQWNLLDGHVFEGTTIDRWALISFGGTPEQKSHIPRFINQLTQRCEQLGIFLNKNTVISPQFESIQVLNNVTLLESKLNRIQRIASNNLQLLICIMEKKHKGYGDLKRIAETSVGVVSQCCLYPNLIKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFNIDEPVMFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIADLGAMVGELLEDFYQEVEKLPNRIIFFRDGVSETQFYKVLQEELQSIKQACSSRFHGYKPLITFVVVQKRHHTRLFPADTDQSSTHNNFHFQHENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSASSLSRAAPPKTPPLPKLSENIKKLMFYC* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1965 1030 SMART Piwi_a_2 678 991 IPR003165 GO:0003676
Mal6g1965 1030 CDD Piwi_ago-like 547 990 IPR045246 -
Mal6g1965 1030 Pfam PAZ domain 393 515 IPR003100 GO:0005515
Mal6g1965 1030 Gene3D - 564 740 - -
Mal6g1965 1030 PANTHER PROTEIN ARGONAUTE 7 114 1029 - -
Mal6g1965 1030 SUPERFAMILY Ribonuclease H-like 662 991 IPR012337 -
Mal6g1965 1030 Pfam Argonaute linker 1 domain 331 380 IPR014811 -
Mal6g1965 1030 ProSiteProfiles PAZ domain profile. 390 499 IPR003100 GO:0005515
Mal6g1965 1030 SMART PAZ_2_a_3 390 530 IPR003100 GO:0005515
Mal6g1965 1030 Gene3D - 750 1030 IPR036397 GO:0003676
Mal6g1965 1030 Pfam Piwi domain 679 988 IPR003165 GO:0003676
Mal6g1965 1030 ProSiteProfiles Piwi domain profile. 678 991 IPR003165 GO:0003676
Mal6g1965 1030 SMART DUF1785_2 330 382 IPR014811 -
Mal6g1965 1030 Gene3D paz domain 376 503 - -
Mal6g1965 1030 SUPERFAMILY PAZ domain 377 535 IPR036085 GO:0005515
Mal6g1965 1030 CDD PAZ_argonaute_like 393 498 - -
Mal6g1965 1030 Pfam N-terminal domain of argonaute 175 321 IPR032474 -
Mal6g1965 1030 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 114 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1965 Mal-Chr6 42535598 42540011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1965 169 1030 Eukaryotic Initiation Factors Gene Family AT1G48410 42.316 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1965 K11593 - gmx:100797755 1715.28