Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1935 ATGCATGAAATGGCTTTCTTCCAAGCAAATTTCATGCTTCAAACCCCTCATCACCATGATGATCATCATCATCCACCACCTTCACTCAACTCAATTCTACCTCAAGATTATCATGGGGGACCATCATTTCTAGGGAAGAGATCTATGTCATTTTCATCAGGAATTGAACTTGGAGAAGAACCAAATATTGCTGATGAAGATTTATCTGATGATGGATCACAAGCTGGTGAGAAGAAGAGGAGACTTAACATGGAACAAGTGAAGACACTTGAGAAAAGTTTTGAGCTTGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTAATTTGCAGCCAAGACAAGTTGCTATATGGTTTCAAAATAGAAGGGCTAGATGGAAGACAAAGCAGTTAGAAAAAGACTATGATGTCCTTAAAAGACAATATGATGCTATTAAGTTGGATAATGATGCACTTCAAGCTCAAAACCAAAAACTTCAAGCAGAGATATTGGCATTGAAAAGTAGAGAACCAACTGAATCAATCAATCTCAATAAAGAAACAGAAGGATCAAGCAGCAATAGAAGTGAAAACAGTTCAGAAATCAAGTTGGATATGTCAAGAACACCAGCTAGTGATAGTCCATTATCTACACACCATACAACAAGCAGAACCTTCTTTCCACCAGCTGCTAGGCCTTCTTCAGGTGGCATTGCTCAACTTTTCCAAACTTCTTCAAGACCAGAAATTCAATGCCAAAAGATTGATCAATTGGTCAAAGAAGAAAGTTTAAGCAACATGTTTTGTGGTATGGATGATCAAGCTGGATTTTGGCCATGGTTGGAGCAGCAACATTTCAATTGA 855 0.3848 MHEMAFFQANFMLQTPHHHDDHHHPPPSLNSILPQDYHGGPSFLGKRSMSFSSGIELGEEPNIADEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAIKLDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSSSNRSENSSEIKLDMSRTPASDSPLSTHHTTSRTFFPPAARPSSGGIAQLFQTSSRPEIQCQKIDQLVKEESLSNMFCGMDDQAGFWPWLEQQHFN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1935 284 MobiDBLite consensus disorder prediction 16 37 - -
Mal6g1935 284 Gene3D - 70 139 - -
Mal6g1935 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 3 284 - -
Mal6g1935 284 MobiDBLite consensus disorder prediction 59 84 - -
Mal6g1935 284 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Mal6g1935 284 MobiDBLite consensus disorder prediction 181 226 - -
Mal6g1935 284 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Mal6g1935 284 CDD homeodomain 78 134 IPR001356 GO:0003677
Mal6g1935 284 Coils Coil 125 173 - -
Mal6g1935 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 284 IPR045224 GO:0003700
Mal6g1935 284 MobiDBLite consensus disorder prediction 178 231 - -
Mal6g1935 284 SMART HOX_1 76 137 IPR001356 GO:0003677
Mal6g1935 284 SUPERFAMILY Homeodomain-like 69 135 IPR009057 -
Mal6g1935 284 Pfam Homeobox associated leucine zipper 133 173 IPR003106 GO:0006355|GO:0043565
Mal6g1935 284 Pfam Homeodomain 78 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1935 Mal-Chr6 41665250 41666952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1935 4 284 Homeobox Transcription Factor Family AT1G69780 62.626 6.57e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal6g1935 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1935 K09338 - gmx:100808033 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1935 6 41665250 41666952 Mal6g1935 6 41665250 41666952 ECH