Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1930 ATGCAAGAAGTTATGAAGAAGCAGAAGCAGAAACAGCTTATCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTCACGTGGACTCAAGAGGAGGATGATATATTGAGAGATCAAATTGGAATCCATGGAACTGAAAATTGGGCAATAATTGCTTCTAAATTCAAGGATAAGACTACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGCAATAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGAAGAACGGATAACGCTGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCTAAATATGAAGCCTTAGCAAAAGAGAACAACATTTCATACACGAATTCAAATAACAAAAGGATTATTTTCCGAGATGAAGCATCAGAATCTGCAGTAGATTTTAAGAAGATGAGGAGGTCACATATCCCTGATGATGCAGAAAAGATCAGCTTTGCAGACAGATCACATAAACAAAATGAAACTTCAAGAGCACCATTGGCAGTTTTAGCTCAAAACTCTCATAATGCCAACAACTTGCCGGATCAGAATCATGTCTGCAATGTGAAGTTTAGTGGTTATGCTCAAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGATCCAAAGATAAACGCATTGATGCAACAAGCCGAGCTACTAACTTCACTAGCTCTAAAAGTTGATGCAGAGAACATGGATCAAAGTCTTGAAAATGCATGGAAGATTCTTCAAGAGTTTATGAACAGAAACAAAGAATCAGATATCCCTGGATATAAGATTCCAGATTTACAGCTTGTAGATCTTAAAGATTTATTGGAAGACTTAAAGAATAGTAGTGAGGAAATCCAGACATGGAGGTATATGGAATTATATGAAGATTCTCCAAGCAGTTCTGAACACAGTACAGGATCAACTACTATTGTGCATCATTCTAATGGGGAGACTTTGGAACACTCACTGCAAATTGGAGATCAAAAGGGAGTTGGAGGATTTGATCAAGTGGTTCTTTCTAGTGCAACTTTGGATCAAGCAGATATATTCTCATCTTGTGAGGAACAGATAAACAATGATGGCATTGTTTCTTCCTTATCAGATACAGAGTTCAGTTCCCCTCTTCAAGTTACCCCTATGTTCAGATCCTTAGCTGCAGGAATTCCAAGTCCACAATTTTCAGAAAGTGAAAGGAACTTTCTCATGAAAACACTTGGAATGGATTCTCCGTCCCTCAACCCAATGGCCAACCCCTCGCAACCGCCACTCTGCAAAAGAGCCCTTCTACAAAGTTAA 1368 0.386 MQEVMKKQKQKQLINEESKKKERHIVTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNISYTNSNNKRIIFRDEASESAVDFKKMRRSHIPDDAEKISFADRSHKQNETSRAPLAVLAQNSHNANNLPDQNHVCNVKFSGYAQNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKILQEFMNRNKESDIPGYKIPDLQLVDLKDLLEDLKNSSEEIQTWRYMELYEDSPSSSEHSTGSTTIVHHSNGETLEHSLQIGDQKGVGGFDQVVLSSATLDQADIFSSCEEQINNDGIVSSLSDTEFSSPLQVTPMFRSLAAGIPSPQFSESERNFLMKTLGMDSPSLNPMANPSQPPLCKRALLQS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1930 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Mal6g1930 455 ProSiteProfiles Myb-like domain profile. 28 71 IPR001005 -
Mal6g1930 455 Gene3D - 79 151 - -
Mal6g1930 455 CDD SANT 80 121 IPR001005 -
Mal6g1930 455 PANTHER TRANSCRIPTION FACTOR MYB88 6 453 - -
Mal6g1930 455 PANTHER MYB PROTEIN-RELATED 6 453 - -
Mal6g1930 455 Pfam Myb-like DNA-binding domain 28 88 - -
Mal6g1930 455 SMART sant 76 124 IPR001005 -
Mal6g1930 455 SMART sant 24 73 IPR001005 -
Mal6g1930 455 CDD SANT 27 71 IPR001005 -
Mal6g1930 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 75 IPR017930 -
Mal6g1930 455 Gene3D - 15 76 - -
Mal6g1930 455 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Mal6g1930 455 SUPERFAMILY Homeodomain-like 24 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1930 Mal-Chr6 41591410 41596169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1930 13 314 MYB Transcription Factor Family AT2G02820 61.950 1.68e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal6g1930 Myb_DNA-bind_6 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1930 K09422 - gmx:100807667 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1930 6 41591410 41596169 Mal6g1930 6 41591410 41596169 ECH