Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1900 ATGGTTATCTATCATATTTTAATATTTATTGGTTTCACAAACAGAATGATAATTGGAGGCAATAATGGAAGCAATAACGGAAGAAGGAATTTGGCGGGGGGTATAGCACTGGGTGCATGCATGGCTACAAACCCCATTGACAGGTGTTGGAGGTGTGATCCTAAATGGGCAATCAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGATGACTACTGGTGGAAGAGACGGTCCTATCTATGTGGTAACTGACCCCTCAGATAGTGACATGGTGAATCCACGTCCTGGTACCCTTAGGTATGGAGTTACAAGAAATGGGCCTTTGTGGATCACCTTCGCTCGTAGCATGAAAATTAGGCTCACCCAGGAACTCATAATGACGAGTAACAAGACCATTGATGGACGAGGAGCTAGTGTTGTCATTGCCAAGGGTGCTGGTATTACTCTCCAGTTCATCAGCAATGTGATCATCCATGGGATCAAAATTTTTGACATTCAGATTGGAAGTGGTGGACTGATTAGAGATGGTGAGGACCATTTTGGTCTAAGGACTATGAGTGATGGTGATGGTATTTCAATTTTTGGCTCCAGCAATATTTGGATTGACCATGTTTCCATGAGAAACTGCAAAGATGGACTCATTGATGCCATTATGGGATCCACTGCTATTACCATCTCCAACAACCATTTCACAGATCACAACGAGGTGATGTTGTTTGGTGCAAGTGATGGCTATGACGGTGATCAGAAAATGCAGATCACAGTTGCATTCAACCGCTTTGGTAAGAGATTAGTCCAGAGGATGCCAAGGTGCAGATTTGGTTTTATCCATGTGCTTAACAATGCCTACACTCACTGGGAAATGTATGCCATTGGTGGCAGCATGCATCCTACCATTATTAGTGAGGGTAACAAATTCATAGCCCCTAACAATGGAAATGCTAAAGAGATAACAAAGAGGGAGTACGTACCAGAGTCAGTGTGGAAAAACTGGCAATGGAGATCAATCAACGACGTGTACTTGAACGGAGCTTTTTTCAAACAAAGTGGAGCTGAGCTGACTAACAGACTATTCTCAAGCAAGGACATGATCAAAGCTAAGCCCGGAACTCATGTGGGAAGGCTTACTCGTTATTCTGGCCGCCTAAAATGCATAGTTGGGAGACCTTGTTAG 1182 0.4365 MVIYHILIFIGFTNRMIIGGNNGSNNGRRNLAGGIALGACMATNPIDRCWRCDPKWAINRKKLADCVQGFGRMTTGGRDGPIYVVTDPSDSDMVNPRPGTLRYGVTRNGPLWITFARSMKIRLTQELIMTSNKTIDGRGASVVIAKGAGITLQFISNVIIHGIKIFDIQIGSGGLIRDGEDHFGLRTMSDGDGISIFGSSNIWIDHVSMRNCKDGLIDAIMGSTAITISNNHFTDHNEVMLFGASDGYDGDQKMQITVAFNRFGKRLVQRMPRCRFGFIHVLNNAYTHWEMYAIGGSMHPTIISEGNKFIAPNNGNAKEITKREYVPESVWKNWQWRSINDVYLNGAFFKQSGAELTNRLFSSKDMIKAKPGTHVGRLTRYSGRLKCIVGRPC* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1900 393 SMART amb_all 118 315 IPR002022 -
Mal6g1900 393 SUPERFAMILY Pectin lyase-like 44 383 IPR011050 -
Mal6g1900 393 Gene3D - 43 386 IPR012334 -
Mal6g1900 393 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Mal6g1900 393 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Mal6g1900 393 PRINTS Pollen allergen Amb family signature 334 358 IPR018082 -
Mal6g1900 393 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Mal6g1900 393 PRINTS Pollen allergen Amb family signature 90 115 IPR018082 -
Mal6g1900 393 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Mal6g1900 393 PRINTS Pollen allergen Amb family signature 364 387 IPR018082 -
Mal6g1900 393 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Mal6g1900 393 PANTHER PECTATE LYASE 18-RELATED 25 393 IPR045032 GO:0030570
Mal6g1900 393 PANTHER PECTATE LYASE 25 393 - -
Mal6g1900 393 Pfam Pectate lyase 127 309 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1900 Mal-Chr6 40119906 40121503 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1900 38 393 Polysaccharide Lyase AT1G14420 66.759 1.03e-177 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1900 K01728 - gmx:100796307 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1900 6 40119906 40121503 Mal6g1900 6 40119906 40121503 ECH