Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1889 ATGGAATCAAAAAAATCACTTACAACAACAATAAACAAATCCTTCGACGAATTCTACTCACACCACGCGCGAGAATCACTCGAAGAATTATCTGAACCATTTACAATCACCGACCCATCAATTTCAAACCACCCAATAATCTTCGCAAGCCACGCGTTTCTGAAGATGACTGGCTTCACGCGCGATGAAGTAGTTGGAAGAAGTGGTTCCATGTTTCAAGGTCCAGCGACATGTCGTAGGTCGGTGATGGAAATTCGTGAAGCTGTGAGGGAAGAGAGAGAAACGAATGTTGTTTTGGTTAATTATAGGAAAAACGGCACGCCGTTTTGGGTTTTGTTGAGTGTTTGTCCTGTTTTTCAAAAGGAACGTGGTGGTGTTGTTCATTTTGTTGCTGTTCAGGTTCCGTTGGATCATAGGAGGAGATGTTCTGTTGTGGTGAGTCATGATTTTGTGTTTCGGTGTTGTCGGAAGGAAGTTTGTTCGGATAGTTTGGTTGAACTTGATCGTGTTTCTTCCCGGAATCAAGTGTTGGATTTGGAACATGATGATGTCACTGATTTGGAGAGTGAAGAGCCGCGCGAGGCAAGTGATGATGAGAGGAGAAGTGCTGTGACTGCTATGGACAACATCTTTTCTGTGCTAACCCACTATAGCGAATTGACGGGAAGATTGGTGTGTAGAAAGAGATGCAGCAATCCTGACTTTCCTCGCAGAACTAATCCACATTTGCCAGACATGCCTATTGTTTATGCCAATGACGCCTTCATGAGATTGACAGGTTATACGAGAGACGAGGTATTGGGCCGCAACTGTAGATTTTTAGGTGGAAGAAATACCGACGACTCAGCTCTACATCTGATAAGGGAGAGCATCAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATATCACCTGTTCGGGATGCTTCGGGAAAGGTAGCATACTTTGTGGGAGTTCAAATAGAAGACGCCTATAAAAACGAAGAATATAGACAGTGTTGGAGACCTGATATGAAAGTGCTTAGTGTGGTTGGTGCAGTCAAGGTTGCAGTGAGGAGTTTATCCATGTCTGCTGGTTCATCAAAGACATAG 1134 0.433 MESKKSLTTTINKSFDEFYSHHARESLEELSEPFTITDPSISNHPIIFASHAFLKMTGFTRDEVVGRSGSMFQGPATCRRSVMEIREAVREERETNVVLVNYRKNGTPFWVLLSVCPVFQKERGGVVHFVAVQVPLDHRRRCSVVVSHDFVFRCCRKEVCSDSLVELDRVSSRNQVLDLEHDDVTDLESEEPREASDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRCSNPDFPRRTNPHLPDMPIVYANDAFMRLTGYTRDEVLGRNCRFLGGRNTDDSALHLIRESIKTEQPCTVRILNYRKDKSSFWNLLHISPVRDASGKVAYFVGVQIEDAYKNEEYRQCWRPDMKVLSVVGAVKVAVRSLSMSAGSSKT* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1889 377 Gene3D PAS domain 20 142 - -
Mal6g1889 377 TIGRFAM sensory_box: PAS domain S-box protein 43 130 IPR000014 -
Mal6g1889 377 TIGRFAM sensory_box: PAS domain S-box protein 248 336 IPR000014 -
Mal6g1889 377 SMART pas_2 21 94 IPR000014 -
Mal6g1889 377 SMART pas_2 222 296 IPR000014 -
Mal6g1889 377 ProSiteProfiles PAS repeat profile. 19 68 IPR000014 -
Mal6g1889 377 CDD PAS 244 333 IPR000014 -
Mal6g1889 377 CDD PAS 30 132 IPR000014 -
Mal6g1889 377 SUPERFAMILY PYP-like sensor domain (PAS domain) 244 334 IPR035965 -
Mal6g1889 377 Gene3D PAS domain 239 370 - -
Mal6g1889 377 SMART pac_2 96 139 IPR001610 -
Mal6g1889 377 SMART pac_2 298 338 IPR001610 -
Mal6g1889 377 SUPERFAMILY PYP-like sensor domain (PAS domain) 31 133 IPR035965 -
Mal6g1889 377 ProSiteProfiles PAC domain profile. 295 349 IPR000700 -
Mal6g1889 377 MobiDBLite consensus disorder prediction 182 202 - -
Mal6g1889 377 ProSiteProfiles PAS repeat profile. 248 270 IPR000014 -
Mal6g1889 377 PANTHER PROTEIN TWIN LOV 1 11 375 - -
Mal6g1889 377 Pfam PAS domain 244 334 IPR000014 -
Mal6g1889 377 Pfam PAS domain 42 133 IPR000014 -
Mal6g1889 377 PANTHER PROTEIN TWIN LOV 1 11 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1889 Mal-Chr6 39710066 39715764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1889 239 368 AGC Kinase Gene Family AT5G58140 42.647 6.44e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1889 - - gmx:100785562 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1889 6 39710066 39715764 Mal6g1889 6 39710066 39715764 ECH