LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal6g1805	ATGTCTCTATCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACGCTCGAACATGCAACGACGGAGGAGAAGAAAAAAGCATCATGATTTTCGGTGTTCGACTCACCGGAGGAAACAATAACAACCACAATACCACCACAACCACCACCAATAACAACCCTTTCAGAAAAAGTGCTAGCATGACCAACCTCTCTCAATATGAACAACAGCCGCCGCAAGATTCCAACGTCGCCGATGCCGGTTATGTCTCCGATGACATCGTTCACGCCTCTGGTCGATCCAGAGAACGCAAACGAGGTGTTCCTTGGACAGAGGAAGAACACAAGTTGTTCTTGTTGGGGTTGCAACAGGTTGGTAAAGGTGATTGGAGAGGGATTTCTAGAAACTTTGTGAAAACTAGGACACCAACTCAGGTGGCAAGTCATGCTCAGAAGTATTTCCTCCGCCGTCATAACCAGAACCGCCGCCGCCGGAGATCCAGTCTCTTTGATATTACCACCGATACGGTGATGGAATCTTCAACTACAATGGAAGATGAGCAATTTCAGCAAGAAACTGTACTACCGCTGCCGCCACCTGCCCCCAGCTCATATCCAGCTTCACATTATGGCGGCATCCCCGGGACACCTTTTCCGATGGGTCTTGGTCCGGTAGCATTGCCGGCGATGAGTGCTGAAAGAGTGGCCAAGCCAATTAGGCCAACACCAATGTTGCCTCCTTCTTCTAAGATGGCTAACTTGAACTTGAAAGACAAAACTTCTTCTTCCATTGAGCCCTTTCCATTGTCATTGAAGCTGCAACCTTCACTGCCACCGTCGGAGGATCATTCGCCTGAAAGTAGCGGCCATTCGTCGTCATCGGCTTCATCAACGGCTTTTAAAACTATGTCTGCAGGGAAGTATAATGGTGGGGGTGGGGATAGCATTATAAGTGTTGCTTGA	945	0.4931	MSLSRTCSQCGNNGHNARTCNDGGEEKSIMIFGVRLTGGNNNNHNTTTTTTNNNPFRKSASMTNLSQYEQQPPQDSNVADAGYVSDDIVHASGRSRERKRGVPWTEEEHKLFLLGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTTMEDEQFQQETVLPLPPPAPSSYPASHYGGIPGTPFPMGLGPVALPAMSAERVAKPIRPTPMLPPSSKMANLNLKDKTSSSIEPFPLSLKLQPSLPPSEDHSPESSGHSSSSASSTAFKTMSAGKYNGGGGDSIISVA*	315

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal6g1805	314	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	96	152	IPR017930	-
	Mal6g1805	314	PANTHER	TRANSCRIPTION FACTOR KUA1	9	310	-	-
	Mal6g1805	314	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	99	150	IPR006447	GO:0003677
	Mal6g1805	314	MobiDBLite	consensus disorder prediction	37	56	-	-
	Mal6g1805	314	MobiDBLite	consensus disorder prediction	274	298	-	-
	Mal6g1805	314	ProSiteProfiles	Zinc finger CCHC-type profile.	7	20	IPR001878	GO:0003676\|GO:0008270
	Mal6g1805	314	Gene3D	-	102	153	-	-
	Mal6g1805	314	CDD	SANT	103	148	IPR001005	-
	Mal6g1805	314	ProSiteProfiles	SANT domain profile.	99	152	IPR017884	-
	Mal6g1805	314	MobiDBLite	consensus disorder prediction	1	23	-	-
	Mal6g1805	314	SMART	sant	100	150	IPR001005	-
	Mal6g1805	314	MobiDBLite	consensus disorder prediction	263	314	-	-
	Mal6g1805	314	MobiDBLite	consensus disorder prediction	1	19	-	-
	Mal6g1805	314	PANTHER	TRANSCRIPTION FACTOR MYB1R1-LIKE	9	310	-	-
	Mal6g1805	314	SUPERFAMILY	Homeodomain-like	98	151	IPR009057	-
	Mal6g1805	314	ProSiteProfiles	Myb-like domain profile.	96	148	IPR001005	-
	Mal6g1805	314	Pfam	Myb-like DNA-binding domain	103	148	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal6g1805	Mal-Chr6	36280181	36282038	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Mal6g1805		Myb_DNA-binding	5.1e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal6g1805	-		-	mtr:MTR_5g037080	475.707