Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1788 ATGAACGGGGGAGATGATCAGGATCGACGTGATTATTATTCTAGAGAGACAATTGATTTTTACAAGGAACTAAAGGCCAGATTTTATCAAGATGATAGGGACAAGTTTGATGAGTTTTATAACATCTTAGTTGCATCACAAGAAAAAAGAATTGACTTTGCGGATTTCCTAGAAAAAGTGAAGAAACTATTTGAAGGTCATAAAGATTTGATATTGAGAATAAACATTTTCTTGCCAAAAGAATATAAAATCAAGCTTCCGGTGGAGGATGAACAATTTGGCCCAAAGAGGCATGTTAGATTGGAAGATGCTAGAAATTTTTTGATAAAAGTAAAGGTACGGGTAATTGACTTTGCGGATTTCCTAGAAAAAGTGAAGAAACTATTTGAAGGTCATAAAGATTTGATATTGAGAATAAACATTTTCTTGCCAAAAGAATATAAAATCAAGCTTCCGGTGGAGGATGAACAATTTGGCCCAAAGAGGCATGTTAGATTGGAAGATGCTAGAAATTTTTTGATAAAAGTAAAGGTACCGGTAATTGACTTTGCGGATTTCCTAGAAAAAGTGAAGAAACTATTTGAAGGTCATAAAGATTTGATATTGAGAATAAACATTTTCTTGCCAAAAGAATATAAAATCAAGCTTCCGGTGGAGGATGAACAATTTGGCCCAAAGAGGCATGTTAGATTGGAAGATGCTAGAAATTTTTTGATAAAAGTAAAGGTACGGGTGTTTTGA 741 0.336 MNGGDDQDRRDYYSRETIDFYKELKARFYQDDRDKFDEFYNILVASQEKRIDFADFLEKVKKLFEGHKDLILRINIFLPKEYKIKLPVEDEQFGPKRHVRLEDARNFLIKVKVRVIDFADFLEKVKKLFEGHKDLILRINIFLPKEYKIKLPVEDEQFGPKRHVRLEDARNFLIKVKVPVIDFADFLEKVKKLFEGHKDLILRINIFLPKEYKIKLPVEDEQFGPKRHVRLEDARNFLIKVKVRVF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1788 246 PANTHER SIN3B-RELATED 181 244 IPR039774 GO:0003714
Mal6g1788 246 PANTHER SIN3B-RELATED 12 114 IPR039774 GO:0003714
Mal6g1788 246 PANTHER PROTEIN, PUTATIVE-RELATED 12 114 - -
Mal6g1788 246 ProSiteProfiles PAH domain profile. 9 81 IPR003822 GO:0006355
Mal6g1788 246 PANTHER SIN3B-RELATED 116 178 IPR039774 GO:0003714
Mal6g1788 246 PANTHER PROTEIN, PUTATIVE-RELATED 116 178 - -
Mal6g1788 246 PANTHER PROTEIN, PUTATIVE-RELATED 181 244 - -
Mal6g1788 246 Gene3D Paired amphipathic helix 17 79 IPR036600 GO:0006355
Mal6g1788 246 SUPERFAMILY PAH2 domain 97 145 IPR036600 GO:0006355
Mal6g1788 246 Pfam Paired amphipathic helix repeat 34 78 IPR003822 GO:0006355
Mal6g1788 246 SUPERFAMILY PAH2 domain 15 83 IPR036600 GO:0006355
Mal6g1788 246 SUPERFAMILY PAH2 domain 162 210 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1788 Mal-Chr6 34982166 34997009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1788 16 91 WRKY Transcription Factor Family AT4G12020 32.895 1.24e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal6g1788 PAH 7.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1788 K11644 - mtr:MTR_7g013380 157.918