Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1782 ATGAAGCGGTCACGTGAGGACGTTTTCATGAGTTCTTCTCAGATGAAGCGGCCTATGCTGAATTCAAGAGGAGAAGCGTCTGGGCAACCTGTGAACGGTGGTGGTCAAAAACTGACTACTAATGATGCCTTGGCGTATCTGAAGGCAGTCAAGGAAATTTTTCATGATAAGAGGGAAAAATATGAGGACTTTTTGGAGGTTATGAAAGATTTTAAGGCACAAAGAGTTGATACTGTGGGTGTCATTGAAAGAGTGAAGGAACTTTTTCGAGGTCATAGAGATCTGATTTTGGGATTTAACACCTTTTTGCCAAAGGGACATGAGATCACCCTTTCGATAGAGGATGAGCAACCTCGCCCGAAAAAGATCGTTGAATTTAATGAAGCTATGAGTTATGTGAACGCGATAAAGACTCGGTTTCAGGGTGATGATCACGTTTACAAGTCATTTCTAGACATATTGAATATGTACAGAAAGGAAAGTAAGCCTATCAGCGTGGTCTACCAGGAGGTTGCTGCACTCTTCCAAGACCATCAGGATCTTCTTGAAGGGTTTATTCATTTTCTTCCAGACGCTACCCCAGCTGCCGCTACTCATGCTGTTGCTCGGAATTCTGTGCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGCGGCGAGTACATGTTGAAAAGAGAGAAAGGACCATTGCTTCACACGGTGACCGTGACCCAAGTGTTGACCGTCCTGACCCAGATCATGAAAGAGGTTTGTTGAGGGCAGAAAAGGAGCATAAGAGACGCATCGAGAAGGAAAAGGACCGTAGAGAAGATAGAGGCAGGAGAGAACGGGAACGAGATTATAGAGATTATGAACATGACAGGGGTCGAGATAGGGAGAGGTTATCCCACAGACGGAAATCTGATCATAAAGCTGAAGACTCAGGAGCTGCTGAACCATTGCTTGACGCAGATCAAAATTTCGGTATGTATAGTCAGGAGTTAGCTTACTGTGAAAAAGTCAAAGAGAGATTACGGAATCCTGACAGCTACCAGGAGTTTATGAAGTGTTTACATATTTACAACAAGGACATTATTACTCGACAAGAATTGCAGTCACTGGTGGGTGATTTATTGGGAAAATTTCCTGATCTTATAGAAGAGTTTGATGAATTTTTGGTACAAGCTGAGAAGAATGGTGGTGGATTCCTTGCCGGTGTCATGAATAAAAAGTCCTTATGGATTGACGGACATGGACTGAAACCAATGAAGGCTGGACAGAGGGATAGAGATAGGGATCATGATAAAGATCGCTACAGGGATGATGGGATGAAAGAAAGGGACCATGAATTCCGAGAAAGGGACAAATCTACTATGATATCCAACAAGGATGCTTCAGGTTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATCTGTCAAAACCAATTAATGAGCTGGACCTTTCTAACTGTGAGCGATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTATCCAATACCTATTGCTAGCCAGAGAACAGATCTTGGTGCGGAAGTGTTGAATGATCACTGGGTGTCAGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTCGATATGTTGGTAGAGTCTGTAAATGTGACAGCTAAACGAGTAGAAGATCTGTTAGAAAAGATCAACACAAATCTAATTAAAGGAAACAGCCCTATTCGTGTTGAGGAGCACTTAACAGCTCTACATTTCAGGTGTATTGAACGAATATATGGTGATCATGGTCTTGATGTGTGTGACGTGGTAAGGAAGAATCCATCTCTAGCTTTGCCAGTGATATCAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGATGTCGTGCTGATTTCAGTAAAGTTTGGGCTGAAATATATTCCAAGAATTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGACGCAAAAAGCTTGAGCACTAAAGGCTTACTGGCCGAAATCAAAGAAATCAATGAGAAGAAACACAAAGAAGACGATGTTCTTCTTGCAATTGCTGCTGGTAATAGACGACCTATTCTTCCTAACCTGGAATTTGAGTATCTTGATGCAGACATCCATGAAGATTTGTACCAGCTTATAAAATATTCGTGTGGAGAAGTTTGCACATCTGAACAGGTGGATAAAGTTATGAAGGTTTGGACAACCTTTTTAGAACCCATGCTCTGTGTTCCTTGTCGGCCCCAGGGTTCTGAGGATACTGAAGATGTTGTTGTAGCCAAGAATAATTCTGTGAGAAATGTTGCTGAAACTGATGGTAGTCCTGGTGTTGGTGCTACCATAATGAACCCAAAGCATATAGATACTTCTAGACATGGTGATGAGTGCCTGCCATTAGATCAGTCAACTTCTAGCAAAGCATTGCAATCAAATGGTGATACTGGGATTAGAGAAGATACATGTCTTGACTCAGACCATACTATGCATAAAAGTGAAACTTTTGGCATTAATCCACAACAGGGTAAACCGGATATTATTGCATTCATGCCTAATGAGCTATCAGGAGTCAATAAGCAAGATCTCTCTGGTGAGCGGTTAGTAAATGCTAACGTCTCGCCAGCATCTGGAATGGAGCTAAGTAATGGAAGAACAGAGATGGATACTGCATCAGGACTTGCTGCTACTCCAACTAGAAATGGTAATGTATCTGGTACGGGAGGACGTGAGTTACCTTCATCAGAGGGTGGTGATTCTGCAAGACCAGGTACATTCACAAATGGGGCCATCGCTGGAGACACTGAAGTTTGCAGATACCAAGAGGAATCAAATCAACAGTTCAAAAGCGAAAGAGAAGAGGTGCATGAAGGAAATGATGGTGCTGTGAATCAGCAATATCAAAATAGACCTGGGGATGAAGATCGTGGTGAAGCCAGAGGAGAAAATTATGCAGATGCTGATGATGAAGGGGATGAAAGTCCTCAGAGGTCAACGGAAGGCAGTGAAAATGCTTCTGGAAATGTTGATGTTTCTGGAAGCGAATCTGCTGATGGCGAGGAGTGTTCTCAAGAAGAGCACGAGGATGGAGAACACGATGATAAGGATGAAAGTGAAGCTGAAGCTGAAGGAATGGCTGATGCACATGATGTTGAAGGAGATGGAACATCATTGCCATTTTCTGAACGCTTTCTTCTAAACGTGAAGCCATTGGCAAAGCATGTTCCCCCAGTGTTTCATGTGAAAGACAGGAATTCTCAAGTTTTTTATGGAAATGACTCCTTTTATGTGCTGATTAGACTTCATCAGACATTGTATGAGAGGATACACTCCGCAAAGGTTAACTCATCATCTGCTGAAAGGAAATGGAGGGCTTCAAATAATACAAGCTCTACTGATCAATATGATAGGTTTATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACGTTAGACAAACTGATATTTAAACTTGTTAAACAGCTTCAAGCTGTTGCGAGTGATGAGATGGATAATAAGCTTCTTCAACTATATGCATATGAGAAATCAAGAAAACCTGGAAAGTTTGTCGATATAGTTTATCATGAAAATGCTCGTGCTCTTCTTCATGATGAGAACTTATATCGCATTGAATATTCATCAAAACCAAAGACACTGTCTATTCAACTCATGGACTGTGGAAATGCTAAGCATGAAGTGACTGGTGTATCACTGGACCCTAATTTTTCAGCCTATCTACACAATGATTTCCTCTCTATTGTCCCTGACAAAAAGTCTGGAATTTTCTTGAAAAGGAACAAACGGGGATATGCGTGCAGTGATGAATTTTCAGGCGAGGTTATGGAAGGGCTACAAATTGTTAATGGTCTGGAGTGTAAGATAGCTTCCATTTCTTCTAAGGCGTCGTACGTTTTAGATACAGAAGACTTCTTGTTTCGGACGAGAAGCAGAAGAAAAGCTCTGCATATGAAGAGTTCATGCTATGAACAAGGAAAGTCTTCAAACATTCGTTCAAGCAGAGTAGCAAGGTTCCGCAAATTGTTTTCCTTCACATGA 4158 0.4149 MKRSREDVFMSSSQMKRPMLNSRGEASGQPVNGGGQKLTTNDALAYLKAVKEIFHDKREKYEDFLEVMKDFKAQRVDTVGVIERVKELFRGHRDLILGFNTFLPKGHEITLSIEDEQPRPKKIVEFNEAMSYVNAIKTRFQGDDHVYKSFLDILNMYRKESKPISVVYQEVAALFQDHQDLLEGFIHFLPDATPAAATHAVARNSVLRDRSSAMPTVRRVHVEKRERTIASHGDRDPSVDRPDPDHERGLLRAEKEHKRRIEKEKDRREDRGRRERERDYRDYEHDRGRDRERLSHRRKSDHKAEDSGAAEPLLDADQNFGMYSQELAYCEKVKERLRNPDSYQEFMKCLHIYNKDIITRQELQSLVGDLLGKFPDLIEEFDEFLVQAEKNGGGFLAGVMNKKSLWIDGHGLKPMKAGQRDRDRDHDKDRYRDDGMKERDHEFRERDKSTMISNKDASGSKMSLYPSKDKYLSKPINELDLSNCERCTPSYRLLPKNYPIPIASQRTDLGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLVESVNVTAKRVEDLLEKINTNLIKGNSPIRVEEHLTALHFRCIERIYGDHGLDVCDVVRKNPSLALPVISTRLKQKQEEWARCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDAKSLSTKGLLAEIKEINEKKHKEDDVLLAIAAGNRRPILPNLEFEYLDADIHEDLYQLIKYSCGEVCTSEQVDKVMKVWTTFLEPMLCVPCRPQGSEDTEDVVVAKNNSVRNVAETDGSPGVGATIMNPKHIDTSRHGDECLPLDQSTSSKALQSNGDTGIREDTCLDSDHTMHKSETFGINPQQGKPDIIAFMPNELSGVNKQDLSGERLVNANVSPASGMELSNGRTEMDTASGLAATPTRNGNVSGTGGRELPSSEGGDSARPGTFTNGAIAGDTEVCRYQEESNQQFKSEREEVHEGNDGAVNQQYQNRPGDEDRGEARGENYADADDEGDESPQRSTEGSENASGNVDVSGSESADGEECSQEEHEDGEHDDKDESEAEAEGMADAHDVEGDGTSLPFSERFLLNVKPLAKHVPPVFHVKDRNSQVFYGNDSFYVLIRLHQTLYERIHSAKVNSSSAERKWRASNNTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIFKLVKQLQAVASDEMDNKLLQLYAYEKSRKPGKFVDIVYHENARALLHDENLYRIEYSSKPKTLSIQLMDCGNAKHEVTGVSLDPNFSAYLHNDFLSIVPDKKSGIFLKRNKRGYACSDEFSGEVMEGLQIVNGLECKIASISSKASYVLDTEDFLFRTRSRRKALHMKSSCYEQGKSSNIRSSRVARFRKLFSFT* 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1782 1385 MobiDBLite consensus disorder prediction 1031 1053 - -
Mal6g1782 1385 MobiDBLite consensus disorder prediction 14 36 - -
Mal6g1782 1385 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Mal6g1782 1385 MobiDBLite consensus disorder prediction 905 1067 - -
Mal6g1782 1385 SUPERFAMILY PAH2 domain 124 191 IPR036600 GO:0006355
Mal6g1782 1385 SUPERFAMILY PAH2 domain 323 386 IPR036600 GO:0006355
Mal6g1782 1385 Pfam Sin3 family co-repressor 485 575 IPR013194 -
Mal6g1782 1385 MobiDBLite consensus disorder prediction 415 459 - -
Mal6g1782 1385 ProSiteProfiles PAH domain profile. 316 388 IPR003822 GO:0006355
Mal6g1782 1385 MobiDBLite consensus disorder prediction 211 313 - -
Mal6g1782 1385 MobiDBLite consensus disorder prediction 1 36 - -
Mal6g1782 1385 MobiDBLite consensus disorder prediction 214 310 - -
Mal6g1782 1385 SUPERFAMILY PAH2 domain 36 105 IPR036600 GO:0006355
Mal6g1782 1385 PANTHER SIN3B-RELATED 5 1361 IPR039774 GO:0003714
Mal6g1782 1385 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 5 1361 - -
Mal6g1782 1385 Pfam C-terminal domain of Sin3a protein 1101 1345 IPR031693 -
Mal6g1782 1385 Coils Coil 251 271 - -
Mal6g1782 1385 MobiDBLite consensus disorder prediction 415 452 - -
Mal6g1782 1385 MobiDBLite consensus disorder prediction 905 922 - -
Mal6g1782 1385 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Mal6g1782 1385 Gene3D Paired amphipathic helix 320 389 IPR036600 GO:0006355
Mal6g1782 1385 Pfam Paired amphipathic helix repeat 145 189 IPR003822 GO:0006355
Mal6g1782 1385 Pfam Paired amphipathic helix repeat 341 385 IPR003822 GO:0006355
Mal6g1782 1385 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Mal6g1782 1385 MobiDBLite consensus disorder prediction 983 1009 - -
Mal6g1782 1385 ProSiteProfiles PAH domain profile. 119 192 IPR003822 GO:0006355
Mal6g1782 1385 MobiDBLite consensus disorder prediction 957 971 - -
Mal6g1782 1385 MobiDBLite consensus disorder prediction 1010 1025 - -
Mal6g1782 1385 SMART hdac_interact2seq4b 483 583 IPR013194 -
Mal6g1782 1385 Gene3D Paired amphipathic helix 121 193 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1782 Mal-Chr6 34517508 34530317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1782 8 118 WRKY Transcription Factor Family AT4G12020 49.558 9.12e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal6g1782 Sin3a_C 1.4e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1782 K11644 - gmx:100811928 2039.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1782 6 34517508 34530317 Mal6g1782 6 34517508 34530317 ECH
Mal6g1782 6 34517508 34530317 Mal5g2666 5 78011984 78028263 PCT