Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1606 ATGGCCGACGAAGCCAAAGCCAAAGGCAACGCCGCATTCTCCTCCGGCGACTTCGCAACCGCCATCCGTCACTTCTCAGAAGCCATCGATCTTTCTCCCACCAACCATGTCCTCTACTCCAACCGATCCGCCGCTTACGCTTCTCTCCAGAACTACACCGACGCCTTAACCGACGCTAAGAAAACCGTCGAACTAAAACCTGATTGGTCAAAGGGTTACAGCCGTCTCGGTGCCGCTCATCTCGGTCTTTCTCAATACGACGACGCCGTTTCTGCTTACAAAAAAGGGTTAGAAATTGATCCTAATAATGAACCCTTGAAATCAGGTTTATCCGATGCACAAAAAGCGGCGACGGCGGCGAGCGGTTATTCTAGGTCACGGTCGGCGCCGGGTGCTAATCCGTTTGGTGATGCTTTTTCTGGACCGGAGATGTGGGCGAAGCTTACGGCTGATCCTACAACTAGGGTTTTTCTTCAACAACCTGATTTTGTGAAGATGATGCAAGATATTCAAAAGGATCCGAATAATTTGAATTTGTATTTGAAGGATCAAAGAGTTATGCAAGCTTTTGGGGTTTTGCTTAATGTTAAGATTGGAAGAGGTGGTGATGATATGGATATGCCTGATATGCCATCGCCGGCTTCGAGTTCAGAGAGGAAGAGAGCTGCTGAGACTGAGCCGCCGAAGCAGGCGGAGGTTGAGCCAGAGCCGGAGCCGATGGAGGTGGCTGATGAGGAGAAGGAAGTGAAGCAGAGGAAAGCTGAGGCACAGAAGGAAAAGGAGGCTGGTAATGCTGCGTATAAGAAGAAGGATTTTGAAACTGCTATTCAGCATTATTCAAAAGCTTTGGAATTGGATGATGAGGATGTTTCCTTTCTCACTAACCGTGCCGCTGTGTACTTGGAAATGGGAAAGTACGAGGATTGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGGAGGGAACTAAGATCAGACTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGGACTGCCTTGGGCAAAATGGCAAAATGCTCTAAAGATTATGAACCCGTCATTGAGACTTTCCAAAAAGCACTCACAGAGCACCGCAACCCAGATACCCTGAAAAAACTTAATGAAGCGGAAAAGGCCAAGAAAGAACTAGAACAACAAGAATACTATGATCCAAATTTGGCTGATGAAGAGAGAGAAAAAGGGAATGAATACTTTAAACAACAGAAGTATCCTGAGGCTATTAAGCATTATACTGAGTCTCTAAAAAGAAATCCGAAAGATCCTAAGGCTTATAGTAACAGAGCTGCATGCTACACCAAACTTGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGCATTGAGCTTGATCCAACCTTCACCAAGGGTTATACTCGGAAGGGTGCGGTTCAGTTTTTCATGAAAGAATATGAAAAGGCTTTGGAAACATATCAGGAAGGGTTGAAACACGACGCAAACAACCAGGAGTTGCTTGATGGGGTTCGGAGGTGTGTACAACAAATCAATAGAACCAGTCGTGGAGATGTAACTCCTGAAGAGTTGAAGGAGAGACAGGCCAAGGCAATGTCAGATCCAGAGATTCAGAACATTCTTCAAGACCCTGTTATGAGACAGGTGTTGGTTGATTTCCAGGAAAATCCTAAGGCTGCACAGGAACATACCAAGAACCCGGGTGTGATGGACAAGATCCAAAAGCTGATCAGTGCCGGAATTGTCCAGATGAAGTAA 1755 0.4587 MADEAKAKGNAAFSSGDFATAIRHFSEAIDLSPTNHVLYSNRSAAYASLQNYTDALTDAKKTVELKPDWSKGYSRLGAAHLGLSQYDDAVSAYKKGLEIDPNNEPLKSGLSDAQKAATAASGYSRSRSAPGANPFGDAFSGPEMWAKLTADPTTRVFLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMQAFGVLLNVKIGRGGDDMDMPDMPSPASSSERKRAAETEPPKQAEVEPEPEPMEVADEEKEVKQRKAEAQKEKEAGNAAYKKKDFETAIQHYSKALELDDEDVSFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRSDYKMIARALTRKGTALGKMAKCSKDYEPVIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEYYDPNLADEEREKGNEYFKQQKYPEAIKHYTESLKRNPKDPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKALETYQEGLKHDANNQELLDGVRRCVQQINRTSRGDVTPEELKERQAKAMSDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1606 584 SMART tpr_5 70 103 IPR019734 GO:0005515
Mal6g1606 584 SMART tpr_5 395 428 IPR019734 GO:0005515
Mal6g1606 584 SMART tpr_5 429 462 IPR019734 GO:0005515
Mal6g1606 584 SMART tpr_5 331 368 IPR019734 GO:0005515
Mal6g1606 584 SMART tpr_5 2 35 IPR019734 GO:0005515
Mal6g1606 584 SMART tpr_5 463 496 IPR019734 GO:0005515
Mal6g1606 584 SMART tpr_5 290 323 IPR019734 GO:0005515
Mal6g1606 584 SMART tpr_5 256 289 IPR019734 GO:0005515
Mal6g1606 584 SMART tpr_5 36 69 IPR019734 GO:0005515
Mal6g1606 584 Coils Coil 367 387 - -
Mal6g1606 584 SUPERFAMILY TPR-like 394 507 IPR011990 GO:0005515
Mal6g1606 584 MobiDBLite consensus disorder prediction 219 236 - -
Mal6g1606 584 Gene3D Tetratricopeptide repeat domain 394 513 IPR011990 GO:0005515
Mal6g1606 584 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Mal6g1606 584 ProSiteProfiles TPR repeat profile. 395 428 IPR019734 GO:0005515
Mal6g1606 584 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 583 - -
Mal6g1606 584 Gene3D Tetratricopeptide repeat domain 253 389 IPR011990 GO:0005515
Mal6g1606 584 Gene3D - 132 198 - -
Mal6g1606 584 MobiDBLite consensus disorder prediction 200 263 - -
Mal6g1606 584 Pfam STI1 domain 525 576 IPR041243 -
Mal6g1606 584 Pfam STI1 domain 142 195 IPR041243 -
Mal6g1606 584 Coils Coil 240 262 - -
Mal6g1606 584 Gene3D - 514 584 - -
Mal6g1606 584 ProSiteProfiles TPR repeat profile. 463 496 IPR019734 GO:0005515
Mal6g1606 584 ProSiteProfiles TPR repeat profile. 429 462 IPR019734 GO:0005515
Mal6g1606 584 Pfam Tetratricopeptide repeat 7 61 - -
Mal6g1606 584 Pfam TPR repeat 402 443 - -
Mal6g1606 584 Pfam TPR repeat 263 304 - -
Mal6g1606 584 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Mal6g1606 584 SMART CBM 141 180 IPR006636 -
Mal6g1606 584 SMART CBM 533 572 IPR006636 -
Mal6g1606 584 ProSiteProfiles TPR repeat profile. 256 289 IPR019734 GO:0005515
Mal6g1606 584 SUPERFAMILY TPR-like 255 383 IPR011990 GO:0005515
Mal6g1606 584 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Mal6g1606 584 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Mal6g1606 584 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Mal6g1606 584 MobiDBLite consensus disorder prediction 243 263 - -
Mal6g1606 584 PANTHER TPR REPEAT CONTAINING PROTEIN 1 583 IPR045248 GO:0006457|GO:0030544|GO:0051879
Mal6g1606 584 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1606 Mal-Chr6 29897472 29901207 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1606 394 490 U-box Gene Family AT3G07370 28.866 3.07e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1606 K09553 - gmx:100816776 944.11