Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1603 ATGGATAAGCGTGAACCACCACACTCTCATCACCCTCTCCCTCACCAACTTCAACCGGAAAATATTGTATTGGTTGACCCTTACCCATTCACAGACACTGCCCCAACCACCGTGATGACACCAACCACTGCTCAATTCCCTCCGTCCAACATCAATACTAACCCTTCCCCTCATTCCGAGCCTTTATCCTTAAAGCCATGCATGGGGGCTTCTTCCTCTATATCTGGTTCGATCAAGAGAAAGAAGGGAAGACCAAGGAAGTATTTTCCTTATGGTAACAATGCTTTAGGCACAGGCTCGGGCCCGACACAACCTATAACTTTTACTTCTCCTTCTTCTTCCGTTGGAATGAAGAATACTAACAGAAGAGGAAGGGGAAGGCCACGTGGCTCTTTTAAGAAGAAACAACTTGTTGAAATTCCTGGAGTTACTAATGGCTCTGGTTTCTCTCCACATGTGATCCTTGTGAACCATGGAGAAGACATTGTTGCAAAAGTTGGGGCCTTTTGTCAAGGAGGACCTAATACAGATATGTGCATTCTTTCTGCTCATGGTTTGGTTGGCAGTGTCGCCATTTATCAGTCAGGGACCATTGTTACTTATGAGGGTCCATTTGAAATTATCTCCCTGTCAGGAAATTTAGAAGTGTCTGACATCACCAATGGATGCAAAATAATGAGTTACTTCAAGGTGTGTCTTGAGAGCCATGGGTCACGCCTTTTGGTAGGTGTAGTTGCTGACAAGCTTATTGCAGCATCGTTAGTAAAGGTCACAGTTGGTAGTTTTACTTTGGATTGCAAAAAGGCTAGCTGGAGTAACCTGAAATCTGGACCTTCTTCAGTGCTATCACCCCTAATTGCTACTTCCGAGACTCCTACCAGTGATTCCTATCAAGAGCCTTCATCTGATTCCTCTGGTGACAGTGGCAATATTCCTTTGAATCAAGTTTCTGGAATCTACAACAATGCTAGTCAGTCAATTCCTACAACGTCAACGTACCAGGACATGCAGGCTCGCCAAAGTCAGCAGTGA 1032 0.4477 MDKREPPHSHHPLPHQLQPENIVLVDPYPFTDTAPTTVMTPTTAQFPPSNINTNPSPHSEPLSLKPCMGASSSISGSIKRKKGRPRKYFPYGNNALGTGSGPTQPITFTSPSSSVGMKNTNRRGRGRPRGSFKKKQLVEIPGVTNGSGFSPHVILVNHGEDIVAKVGAFCQGGPNTDMCILSAHGLVGSVAIYQSGTIVTYEGPFEIISLSGNLEVSDITNGCKIMSYFKVCLESHGSRLLVGVVADKLIAASLVKVTVGSFTLDCKKASWSNLKSGPSSVLSPLIATSETPTSDSYQEPSSDSSGDSGNIPLNQVSGIYNNASQSIPTTSTYQDMQARQSQQ* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1603 343 MobiDBLite consensus disorder prediction 289 343 - -
Mal6g1603 343 ProSitePatterns HMG-I and HMG-Y DNA-binding domain (A+T-hook). 120 130 IPR000637 GO:0006355
Mal6g1603 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 263 - -
Mal6g1603 343 MobiDBLite consensus disorder prediction 1 20 - -
Mal6g1603 343 ProSiteProfiles PPC domain profile profile. 146 284 IPR005175 -
Mal6g1603 343 MobiDBLite consensus disorder prediction 94 129 - -
Mal6g1603 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 263 IPR005175 -
Mal6g1603 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 33 343 - -
Mal6g1603 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 343 IPR039605 GO:0003680
Mal6g1603 343 Gene3D - 151 274 - -
Mal6g1603 343 MobiDBLite consensus disorder prediction 96 120 - -
Mal6g1603 343 CDD DUF296 151 262 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1603 Mal-Chr6 29804285 29808866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1603 1 274 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 35.404 2.89e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1603 - - mtr:MTR_5g014360 396.356