Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1578 ATGATGGAACAAAACTCAGAACAAGACAATCGTGAACTCTACGCAATCCTAAACCTATCACCCGAATCCTCCGACGAAGAAATCCGCAAAGCTTATCGTCAATGGGCACAAGCATATCACCCAGACAAGTACCAAAATCCTCTCATGAAAGATGCAGCTACCGAGAATTTCCAACGAGTTTGTGAAGCTTATGAGATTCTTTCGGATCCTAATAAGAGACAAGTTTATGATATTTATGGTATGGAAGGGTTGAAATCTGGTTTGGAACTTGGTCCGAGGTTGGATAGAGCTGAAGAGATTAAAGCGGAGTTGGAGAGGTTGAAGAGAAGGAGGGAACATGAGAAGATGTTGGCGCATTTTCAATCTTCCGGGACGATTTTGGCTAATTTGTCTGTGCCGCAATATTTAGACGGTGATGGTCTCTTTAGAGGAATGGCAATGACGAGTGAAGTTCAGTCTCAATTGTCAAAACGAAATGTTGTTGCGATTAGCGGAAATTTAGCAGTTGATGGACATGAAGGTGGTGGAGCTGCTAACGCTGTATTAAGTCATCAACTTTCAGAAGTTTCGTCAATAGAATTCATTGCTTCAGCTGGTTTACGTTCACTAATTGGGGTGCAGACATCACGCATTATATCATCACACTCGTCTGCAACAGCAGGCTTAACAATGTCTTTGAGAGATGGTTCGTTGAATCTTTCTAATGCATGGACCCGCCAACTGTCAAAAACAACAAATGGACATATACAACTCATGTTGGGATCACAACCATCTGTAGCTATAGGGTGGAAGAAAGAAGATGAGAAAAGGACTGCCACTGCAGAAGTGAAGTTAGGCACAGGTCCTTTTGAGACAGCAGCTCGGTATACTCATCACTTTTCTTCTAAATCTCATGGCTGCATTGGAGGAAGATTTGGGAGTTCTTCCATTGAGATGGAAGTTGGTGGTGGAAGGAAGTTATCCAAATTCAGTACTGTGCGCTGGTTGTATGTAGTAGGACTTCAGGGTATTTCTTGGAGATTTGAATTCTGTCGTGGGGGTCAGAAGTTGATTATTCCTATTTTGCTGACGAATCATTTGAACCCTATGTTTGCTACTGGAGCATTAGTTATTCCAGCATCTTTTTACTTTGTTCTGAAGAAATTTTTCATTAAACCGTATTACCTTAAAAGGAATAAGCAGAAGGCTCTAGAGAAGGAGGGAAAATCTTCTGCTCAGGTTCAAGAAGGAAGGGCAGCAGCAGAGAAAGCTCAGAAATTACAACAAAATGTGGCTAATAGGAAAAGAAACAGGCAATTAGAAACGGGTGGACTGGTTATTATGAAAGCGCTATATGGAAGTGATACAATTTTGAACAACTTGTATTCGTCAAGTGGAACAAGTTTTGAATCTACTTCAGGAGTCATTGATGTTACAACACCTCTGAATTTTCTAGTTAATGATTCTGGTCAACTTAAGCTTCACGAAGGTGTAAAGAAATCAGGAATCATGGGATTTTGTGATCCTTGTCCAGGAGAAACTAAACTGTTGTATGTAGAGTATGCTCATGCCGGCAATCAACACAAGGTCTTGGTTGGTGACTACGAAGAATTAGTAATACCCCAGGGCATCCATAGGATATAA 1623 0.4104 MMEQNSEQDNRELYAILNLSPESSDEEIRKAYRQWAQAYHPDKYQNPLMKDAATENFQRVCEAYEILSDPNKRQVYDIYGMEGLKSGLELGPRLDRAEEIKAELERLKRRREHEKMLAHFQSSGTILANLSVPQYLDGDGLFRGMAMTSEVQSQLSKRNVVAISGNLAVDGHEGGGAANAVLSHQLSEVSSIEFIASAGLRSLIGVQTSRIISSHSSATAGLTMSLRDGSLNLSNAWTRQLSKTTNGHIQLMLGSQPSVAIGWKKEDEKRTATAEVKLGTGPFETAARYTHHFSSKSHGCIGGRFGSSSIEMEVGGGRKLSKFSTVRWLYVVGLQGISWRFEFCRGGQKLIIPILLTNHLNPMFATGALVIPASFYFVLKKFFIKPYYLKRNKQKALEKEGKSSAQVQEGRAAAEKAQKLQQNVANRKRNRQLETGGLVIMKALYGSDTILNNLYSSSGTSFESTSGVIDVTTPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGETKLLYVEYAHAGNQHKVLVGDYEELVIPQGIHRI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1578 540 Coils Coil 94 117 - -
Mal6g1578 540 PRINTS DnaJ domain signature 32 47 IPR001623 -
Mal6g1578 540 PRINTS DnaJ domain signature 14 32 IPR001623 -
Mal6g1578 540 PRINTS DnaJ domain signature 52 72 IPR001623 -
Mal6g1578 540 PRINTS DnaJ domain signature 72 91 IPR001623 -
Mal6g1578 540 PANTHER CHAPERONE PROTEIN DNAJ 13 1 540 IPR042162 -
Mal6g1578 540 SUPERFAMILY Chaperone J-domain 9 90 IPR036869 -
Mal6g1578 540 Pfam DnaJ domain 13 77 IPR001623 -
Mal6g1578 540 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Mal6g1578 540 Gene3D DnaJ domain 1 90 IPR036869 -
Mal6g1578 540 Pfam DnaJ-like protein C11, C-terminal 386 534 IPR024586 -
Mal6g1578 540 CDD DnaJ 12 69 IPR001623 -
Mal6g1578 540 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Mal6g1578 540 SMART dnaj_3 11 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1578 Mal-Chr6 29067321 29078989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1578 2 79 C2H2 Transcription Factor Family AT1G74250 44.048 7.81e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1578 K09531 - gmx:100817782 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1578 6 29067321 29078989 Mal6g1578 6 29067321 29078989 ECH