Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1573 ATGGAGAGGTACAAATGCAAGCTTTGCTCAAGAACATTCACCAATGGCAGAGCATTAGGTGGACACATGAAGGCTCATTTAGCCACCCTTCATCTTCCTCCTCCAAACCCCCAACCACAACCACAATCTCACCACACTCCTTCTACTTCTTCTACCTTACTCTCTTTTTCATCTTCTTCTGAAAATGAACCAGACCAACAAACAGTAGAACAAAGAAACTCAACTGAAAAGAGTCCAATGTATAGGTTGAGAGAAAATCCCAAAAAAGGTCTCAAACTTTCAGATCCCAAGTTTTCTTTCACAACAACAGATAGTACTAGTACTAGTGAGTACATTTTTCATGACAGAGAGAGTGAGACTGAGTCAAAGAACCCAACTCAAAAAAGAAAACTCACCTTTAGCCAAAACTCAGAACAAAAGAAGCTTAAACAAAGTTTACTAGATTCACATTCACCACTAACAGAAACTGAACCAGAACCTGTTAGTTCAATTTTCGACTTTTCCTACGAAGAAGAAGCTGCTATGACCCTTATGATGCTATCAAGAGATAAATGGAAGAACAATGTTGTTATCAAAGAAAAAGCACAAGAAGCTCGCAATGGAAAGTCACAAAAGCATTTGTCTTCAAAATGA 633 0.3839 MERYKCKLCSRTFTNGRALGGHMKAHLATLHLPPPNPQPQPQSHHTPSTSSTLLSFSSSSENEPDQQTVEQRNSTEKSPMYRLRENPKKGLKLSDPKFSFTTTDSTSTSEYIFHDRESETESKNPTQKRKLTFSQNSEQKKLKQSLLDSHSPLTETEPEPVSSIFDFSYEEEAAMTLMMLSRDKWKNNVVIKEKAQEARNGKSQKHLSSK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1573 210 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 199 IPR044303 GO:0006355
Mal6g1573 210 SUPERFAMILY beta-beta-alpha zinc fingers 3 27 IPR036236 -
Mal6g1573 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Mal6g1573 210 MobiDBLite consensus disorder prediction 110 126 - -
Mal6g1573 210 SMART c2h2final6 4 26 IPR013087 -
Mal6g1573 210 MobiDBLite consensus disorder prediction 77 92 - -
Mal6g1573 210 MobiDBLite consensus disorder prediction 43 76 - -
Mal6g1573 210 Pfam C2H2-type zinc finger 3 28 - -
Mal6g1573 210 MobiDBLite consensus disorder prediction 127 158 - -
Mal6g1573 210 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 199 - -
Mal6g1573 210 MobiDBLite consensus disorder prediction 28 160 - -
Mal6g1573 210 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1573 Mal-Chr6 28958194 28958879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1573 1 188 C2H2 Transcription Factor Family AT3G60580 36.082 2.88e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal6g1573 zf-C2H2_6 8.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1573 - - mtr:MTR_5g012630 244.973