Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1550 ATGGAACAAGTTTCTGTCCCAACAGACAAAGAAATTGAACTAACCACTTCCTCCTCCATTGAAGATAACAAAACCAAAAACAAAGGTGATAATGGGAAGCACCCATTGTATCGTGGAGTACGAATGCGTAGTTGGGGAAAATGGGTTTCAGAAATTAGAGAGCCAAAGAAAAAATCCAGAATCTGGCTAGGCACTTTTCCTACACCAGAGATGGCAGCTCGGGCCCATGACGTTGCGGCCCAAGCCATCAAAGGCAGCTCAGCTTACCTCAATTTCCCCGAATTAGCTCAATATCTTCCGCGCCCAGCTACCAATTCTCCTAAGGACATTCAAGCCGCTGCTGCTAAGGCAGCGGCTATGGACTATCACCATGAAGCCCAGAACCAGGCTGAGGCCCGCGCCATACAAGAATCCTTAAATGATGAGGATGACACATTCTACGACCTCCCTGATCTCTTACTCGATTCAAATAAGAGTTCAAGTGAGTTTCATTATTCTTCCATACCATGGTTCGTGGCTGGAGCTGAATATCCAAACCCAAGTTTTGTGCTGGATGAGCCTTTAACGTGGGAACCTTAG 579 0.4646 MEQVSVPTDKEIELTTSSSIEDNKTKNKGDNGKHPLYRGVRMRSWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAAQAIKGSSAYLNFPELAQYLPRPATNSPKDIQAAAAKAAAMDYHHEAQNQAEARAIQESLNDEDDTFYDLPDLLLDSNKSSSEFHYSSIPWFVAGAEYPNPSFVLDEPLTWEP* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1550 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 22 167 - -
Mal6g1550 192 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Mal6g1550 192 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Mal6g1550 192 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Mal6g1550 192 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Mal6g1550 192 MobiDBLite consensus disorder prediction 23 37 - -
Mal6g1550 192 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Mal6g1550 192 MobiDBLite consensus disorder prediction 1 37 - -
Mal6g1550 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 167 - -
Mal6g1550 192 MobiDBLite consensus disorder prediction 1 22 - -
Mal6g1550 192 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Mal6g1550 192 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Mal6g1550 192 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1550 Mal-Chr6 28711277 28711855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1550 24 188 AP2-EREBP Transcription Factor Family AT2G44940 48.558 3.92e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g1550 AP2 4.5e-14 CL0081