Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1544 ATGACTAATGAAAAGGAAGATTTGGGTTTGAGCCTAAGTTTGAGCTTCCCTCAAAATCCCCCAAATCCTCAATACCTTAATCTTATGTCTTCTTCAACTCATTCATCTTCTCCTTCTAGCTACAGTCCTCAAAAACCCTCTTGGAACGATGCTTTTACTTCTTCAGATCGGGATTCGGAAACATGCAGAATCGAAGAACGACCGTTGCTCCTCCGAGGAATCGATGTGAATCGATTACCTTCTGGTGCTGATTGTGAAGAAGAAGCAGGAGTTTCATCACCAAACAGCACTGTTTCGAGTGTGAGTGGTAATAAAAGAAGCGAAAGGGAAGTTACTGGTGAAGATCTTGACATGGAAAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGACGCTGAAACTTCAAGGAAAAAACTTAGACTCACCAAAGACCAATCAATTATTCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAATTGGCACTTGCAAAACGATTGGGTCTGCGTGCTAGACAAGTTGAAGTTTGGTTTCAAAATCGTAGAGCAAGGACTAAGTTGAAGCAAACAGAGGTAGATTGTGAGTTTTTGAAAAGATGTTGTGAGAATCTAACGGATGAAAATAGACGGTTGCAAAAGGAGGTACAAGAGCTAAGAGCATTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCTACAACACTTACCATGTGCCCCTCTTGTGAGCGTGTCGCTGTTCCATCAACAGCCGTTGATGCTGCCGCACGTCGTCATCCTATGGTTCCAAATCACCCTCGTACATTTCCTGTGGGCCCATGGGTCACAGCTGCTCCTATGCAACAAAGGACCTTTGATACACTCCGTCCTAGATCTTAA 894 0.4273 MTNEKEDLGLSLSLSFPQNPPNPQYLNLMSSSTHSSSPSSYSPQKPSWNDAFTSSDRDSETCRIEERPLLLRGIDVNRLPSGADCEEEAGVSSPNSTVSSVSGNKRSEREVTGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKRLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSTAVDAAARRHPMVPNHPRTFPVGPWVTAAPMQQRTFDTLRPRS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1544 297 PANTHER - 2 288 - -
Mal6g1544 297 Pfam HD-ZIP protein N terminus 3 110 IPR006712 GO:0005634
Mal6g1544 297 PRINTS Lambda-repressor HTH signature 163 172 IPR000047 GO:0003677
Mal6g1544 297 PRINTS Lambda-repressor HTH signature 172 188 IPR000047 GO:0003677
Mal6g1544 297 Gene3D - 142 188 - -
Mal6g1544 297 MobiDBLite consensus disorder prediction 107 135 - -
Mal6g1544 297 MobiDBLite consensus disorder prediction 1 55 - -
Mal6g1544 297 SUPERFAMILY Homeodomain-like 127 193 IPR009057 -
Mal6g1544 297 MobiDBLite consensus disorder prediction 84 135 - -
Mal6g1544 297 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Mal6g1544 297 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Mal6g1544 297 Coils Coil 191 228 - -
Mal6g1544 297 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Mal6g1544 297 CDD homeodomain 136 193 IPR001356 GO:0003677
Mal6g1544 297 MobiDBLite consensus disorder prediction 90 106 - -
Mal6g1544 297 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Mal6g1544 297 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 288 - -
Mal6g1544 297 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Mal6g1544 297 MobiDBLite consensus disorder prediction 1 66 - -
Mal6g1544 297 SMART HOX_1 134 196 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1544 Mal-Chr6 28617859 28619450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1544 1 297 Homeobox Transcription Factor Family AT4G17460 59.355 5.68e-106 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal6g1544 HD-ZIP_N 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1544 K09338 - gmx:100813367 415.231