Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1540 ATGTACACAGAGAGTAATTATGAATCCGACTTGGCTATTTTAGAATCTATTCAGCGTCACTTGCTCGGAGATTCCGATGTTTTTACATTCGGAGCTCCATCTAATGTTCCAGTTTATTGTCGGAGCTCAAGCTTCAACAACCTTAAACCATGTCTGAGTGAGAATTGGGGTGAACTTCCACTACAAGAAAACGATTCAGAGGACATGATTCTTTATGGTGTACTTCGTGATGCTGTTAACGTTGGGTGGGTTCCATCTCTCGAAGCATCTTCACCAGAGAGTTTTTCATCTGGTTTCACGCCGGAAAAGATTGTTAAATCAGAGCCGGATATTTTCCCGGAAATGCAGAGTTCGTCTGAGATGATTGTTTCTACGCCGGTGGTTGCGCCGGCAACGGGGAAGCATTACCGGGGAGTGCGACGACGGCCATGGGGAAAATATGCCGCGGAGATTCGTGACCCGGCTAAAAATGGCGCGCGGGTTTGGCTTGGAACATTTGAAACAGATGAGGATGCAGCTTTGGCTTACGACCGAGCCGCATATAGGATGCGTGGCTCGCGGGCTATGTTGAATTTTCCGCTCCGGGTTAATTCGGACGAACCCGACCCCGTTAGAGTGTCGTCAAAGTCAAAACGATACTCATTGGCTGAGTCATCTTCTTCATCGGAGGGTGGTTCGATAGTGAAACGGAGGAAGAAGGTGGTGGGGGAAATGGTGACTCCTCAAGGTGGAATGAAAATGGCGCAAGTGGATTTTGGGTCACGACAGAAGTTTAGAGGATCATCCACATTGAGTTAA 798 0.4787 MYTESNYESDLAILESIQRHLLGDSDVFTFGAPSNVPVYCRSSSFNNLKPCLSENWGELPLQENDSEDMILYGVLRDAVNVGWVPSLEASSPESFSSGFTPEKIVKSEPDIFPEMQSSSEMIVSTPVVAPATGKHYRGVRRRPWGKYAAEIRDPAKNGARVWLGTFETDEDAALAYDRAAYRMRGSRAMLNFPLRVNSDEPDPVRVSSKSKRYSLAESSSSSEGGSIVKRRKKVVGEMVTPQGGMKMAQVDFGSRQKFRGSSTLS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1540 265 CDD AP2 134 193 IPR001471 GO:0003700|GO:0006355
Mal6g1540 265 MobiDBLite consensus disorder prediction 246 265 - -
Mal6g1540 265 Gene3D AP2/ERF domain 134 196 IPR036955 GO:0003700|GO:0006355
Mal6g1540 265 PANTHER BNAANNG21280D PROTEIN 23 234 - -
Mal6g1540 265 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Mal6g1540 265 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Mal6g1540 265 MobiDBLite consensus disorder prediction 211 225 - -
Mal6g1540 265 SUPERFAMILY DNA-binding domain 135 195 IPR016177 GO:0003677
Mal6g1540 265 MobiDBLite consensus disorder prediction 199 240 - -
Mal6g1540 265 Pfam AP2 domain 135 185 IPR001471 GO:0003700|GO:0006355
Mal6g1540 265 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Mal6g1540 265 PANTHER DNA-BINDING DOMAIN 23 234 IPR044808 GO:0003700|GO:0009873
Mal6g1540 265 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1540 Mal-Chr6 28536137 28536934 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1540 1 245 AP2-EREBP Transcription Factor Family AT4G17500 52.030 1.88e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal6g1540 AP2 9.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1540 K09286 - gmx:100819649 307.76