Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1515 ATGGGTAAACAAGGACCTTGCCATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCACCAGAGAAGCCAATACTATGCAATGCATGTGGCTCGCGGTGGAGGACAAAGGGAACACTTGCAAATTACACACCTTTACATGCTCGGGCTGAAACTGATGATTTTGATGATCAAAGGGCTTACAGGGTAAAGAGCATATCATTAAATAAGAACAAAGAAGTGAAATTTCTCAAACGGAAGCAGAGCCATTATAATGTAGTATCTGGAGGGCTTGCATCTGATTACAACCAGGGATTCCAAAAGGCTTTTGATGAAGATATGAGTAATCGATCAAGTTCGGGATCAGCTTTGTCTAACTCAGAGAGCTGCGCACAATTTGGTGGCACGGATGCTAGTGATCTGACAGGACCTTCTCAGTCAGTGATCTGGGATACCACAGTGCCTTCAAAAAAGAGGACATGTGCAGGTCGTGCAAAACCATCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACTATTCTTCATGAACAACAATCTTGTTTTTCTGCATCTTCTGACGGGGATCTTCTTTACGAAAGTGAAGCACCGATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCTAGCTATGTAGCTCGCGACGAAGAGTCTGAGGCTAGCTCTCTTTCATTTGATAATGGACAATACCCAATGAGTGACGCATATTCTTATTCTGGCGCCGTTCTTAAAAGTGACAAGTCTCAGCTGGAAAGAGTACAAATCCTTGGAAGTCATGATTCACCCTTGTGTTTAGTAGATTTAAATGATGTGGTAAACTATGAAGAGTTTTCTAGGAATTTGTCATATGAAGAGCAGCAGCAATTATTGAAGTTTCTTCCTGTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAGGTCATGTTCAGTAGCTCTCAATTCAAGGAGAACTTAACTAATTTTCAGCAGCTTCTCACGGAAGGTGCCTTTGATATCTCTTTGTCGGGGATAAAACCTGAAGACTGCGAGACTTTGAAAAGATATGCACTATATGATTTGTCAAAGTCGACATGGGTGGAACACTATCATAACAAGAGATGTAAAAGTAGAGCTGAAAAATCGGATACTCCAGGATCTACTGGTATAGCATCAACCAATGTTGCAAATGTGAAGAGAATGCGTGATAGCAGAAATCAGAACTTTCCAGAGGTGAAGACAATAATGAGGAGCCCCAAAAGAATCATCACAAAGACTAGTTATAATCCAAAAAGCCTATTTCCTTTGCCTCCTGATGCAAGCTCACACTTGCTAGATTCTTTTAACTTCGTCGAGGAGAGTTCTGATCAGGATCTGCTGCTAGAAGTGCCTTCTAATAATTCTTTTCCACAGGCAGAACTTCTGCTCCCAACTTCAAGCTTTGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGCATACTCACATCTTGTGAACCATTAA 1491 0.4192 MGKQGPCHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARAETDDFDDQRAYRVKSISLNKNKEVKFLKRKQSHYNVVSGGLASDYNQGFQKAFDEDMSNRSSSGSALSNSESCAQFGGTDASDLTGPSQSVIWDTTVPSKKRTCAGRAKPSSVEKLTKDLCTILHEQQSCFSASSDGDLLYESEAPMVSVEIGHGSVLIRHPSYVARDEESEASSLSFDNGQYPMSDAYSYSGAVLKSDKSQLERVQILGSHDSPLCLVDLNDVVNYEEFSRNLSYEEQQQLLKFLPVVDTAKLPDSLKVMFSSSQFKENLTNFQQLLTEGAFDISLSGIKPEDCETLKRYALYDLSKSTWVEHYHNKRCKSRAEKSDTPGSTGIASTNVANVKRMRDSRNQNFPEVKTIMRSPKRIITKTSYNPKSLFPLPPDASSHLLDSFNFVEESSDQDLLLEVPSNNSFPQAELLLPTSSFGAQASTSSSSAYSHLVNH* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1515 496 MobiDBLite consensus disorder prediction 107 142 - -
Mal6g1515 496 PANTHER GATA TRANSCRIPTION FACTOR 26 248 495 - -
Mal6g1515 496 Gene3D - 262 358 IPR038108 -
Mal6g1515 496 PANTHER GATA TRANSCRIPTION FACTOR 26 1 246 - -
Mal6g1515 496 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Mal6g1515 496 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Mal6g1515 496 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Mal6g1515 496 Pfam Asx homology domain 253 353 IPR028020 -
Mal6g1515 496 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Mal6g1515 496 PANTHER OSJNBB0038F03.10 PROTEIN 248 495 IPR044589 -
Mal6g1515 496 PANTHER OSJNBB0038F03.10 PROTEIN 1 246 IPR044589 -
Mal6g1515 496 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
Mal6g1515 496 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Mal6g1515 496 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 264 377 IPR044867 -
Mal6g1515 496 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1515 Mal-Chr6 28243233 28247217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1515 1 472 C2C2-Gata Transcription Factor Family AT4G17570 52.250 4.17e-152 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal6g1515 ASXH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1515 - - mtr:MTR_5g013370 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1515 6 28243233 28247217 Mal5g3817 5 106827098 106832194 PCT