Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1479 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAAGGACTTAGGGTTCTTCTCCTTGAAGGAGACAACAATTCTGCTTCTGAAATAAGAGCAAAGCTTGAATCCATGGACTATAATGTTTCTACCTTCTACGATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGTCCCAAAGGTTTCCATGTTGCCGTTGTGGAGGTGAGTATAAGCTGCCCTGATGGAGGTTTCAAATTTCTCGAGAATGCGAAGGACTTGCCAACCATTATGACTTCCAATAGTCAGTGCATAAACACAATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTCCTCACTAAACCACTTTCTGAGGACAAGCTGAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCCGAGGCAAGCTCTCTGTCTGAATCGCTTAAACCGGTCAAAGAATCTGTAGAGTCCATGTTGCAGCTCGAGACAGACAACAAACTACATGAAAGTACAATATCAATAGATTTAGAGAACGTGTCCAAGTTTAGTGATAATGAACATGAGCATTCTGCCGCAAGTGATAAATATCCGGCGCCTTCGACCCCACAATTAAAACAAGGGGCAAGGTTAGTGGATGATGGTGATTGCCATGAACAGACTAATTGCTCAATAGAAAAAGAAAGTGGGGAACATGACAGTGGTGAATGTAAATTTGTCGAAACTTCATGTGAGAATTTGAACATTGAAAGTTCTCTTCAACCAACGAAACCTCTGATTAAGGAGGAAGATGATTTCGCCAATGGTTCCAAGGGTGAAAATGGTGCTTCATTGAATCCACAGAATAAAAAATTTCTCGGCAGCTCTGGTGGTAATACATCTCCGAATAAAACAAGTGTTGTCAACGACCCATGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGATTGGACTGCTGAGCTGCACAAGAAATTTGTGAAGGCAGTTGAACAACTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTGATGAAAGTTGACGGTTTGACAAGGCATAATGTGGCAAGCCATCTACAGAAGTATAGAATTCACAAGAGACAGATCATCCACACGGACGAAGATCGAAAATGGCCAAATCGAAGAGATCCTATGCAAAGGAACTATTGTATGCAAAGACCGATCATGGCTTATCCACCATATCATTCTAATCACTCCTTTCCTCCAGCTCCTGCATATCCTATGTGGGGCCAACATGGAAGTCAAACAGCTGGTGTACCGATTTGGGGTCCTTCTCCAGGTTATCCTCTATGGCAGCCTACAGAAAGTTGGCATTGGAAGCCATATCCGCCGGGGGTGCATGTGGATGCATGGGGTAACCCAGTGTTGCCACCTCCTCAAGCTCACTGTTTTCCTTACACTCAAAATATATCTGGGTTGCACAATGCTAAAGCAGTGGATTATAGTTATCCGGCAGAGGAAGTGGTGGACAAGGTTGTGAAGGAGGCAATAACCAAGCCATGGCTACCTTTACCTATAGGCCTCAAACCTCCTTCAATGGACAGTGTGTTGGATGAACTTTCCAAACAAGGCATCCCTTTTAGAAAGGGCTCTAAACCCCACTGA 1626 0.4323 MVCTANDLQGWKDFPKGLRVLLLEGDNNSASEIRAKLESMDYNVSTFYDENEALSAISSSPKGFHVAVVEVSISCPDGGFKFLENAKDLPTIMTSNSQCINTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAEASSLSESLKPVKESVESMLQLETDNKLHESTISIDLENVSKFSDNEHEHSAASDKYPAPSTPQLKQGARLVDDGDCHEQTNCSIEKESGEHDSGECKFVETSCENLNIESSLQPTKPLIKEEDDFANGSKGENGASLNPQNKKFLGSSGGNTSPNKTSVVNDPCENKANRKKMKVDWTAELHKKFVKAVEQLGIDQAIPSRILELMKVDGLTRHNVASHLQKYRIHKRQIIHTDEDRKWPNRRDPMQRNYCMQRPIMAYPPYHSNHSFPPAPAYPMWGQHGSQTAGVPIWGPSPGYPLWQPTESWHWKPYPPGVHVDAWGNPVLPPPQAHCFPYTQNISGLHNAKAVDYSYPAEEVVDKVVKEAITKPWLPLPIGLKPPSMDSVLDELSKQGIPFRKGSKPH* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1479 541 MobiDBLite consensus disorder prediction 261 309 - -
Mal6g1479 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 308 367 IPR017930 -
Mal6g1479 541 SUPERFAMILY CheY-like 16 135 IPR011006 -
Mal6g1479 541 SUPERFAMILY Homeodomain-like 310 368 IPR009057 -
Mal6g1479 541 MobiDBLite consensus disorder prediction 183 205 - -
Mal6g1479 541 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 311 366 IPR006447 GO:0003677
Mal6g1479 541 Pfam Myb-like DNA-binding domain 314 363 IPR001005 -
Mal6g1479 541 MobiDBLite consensus disorder prediction 270 303 - -
Mal6g1479 541 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Mal6g1479 541 Gene3D - 307 369 - -
Mal6g1479 541 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Mal6g1479 541 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 536 - -
Mal6g1479 541 Gene3D - 18 147 - -
Mal6g1479 541 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 536 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1479 Mal-Chr6 27357055 27362192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1479 1 532 Response Regulator Gene Family AT4G18020 49.206 1.07e-140 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mal6g1479 Response_reg 3.3e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1479 - - gmx:100784905 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1479 6 27357055 27362192 Mal5g3779 5 106233900 106238590 PCT