Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1419 ATGCCTATGTATCAGCCTTCTAAAAGGGATATGGTTGTTGGGTATGAGGGTGGTGGTGATGGTCAGATTCTAGATCTGGACACAGCTGTGAAAGATGGGGTTTTGGGTGGTGTTGATTGTGGTGGTGTTGTGGGAACTGGTGTTGTTGGTGAGAAATTAGATCTGAGAAAAATGATTCAAGAGCTTGAATTATGTGAAGTACCAAGTGTTTTCATTTGTCCAATTTCTCTTGAACCAATGCAAGACCCTGTTACACTTTGCACTGGACAAACCTATGAGAGGAACAACATTCTCAAATGGTTTAATATGGGACACTTTACTTGTCCTACAACTATGCAAGAGCTTTGGGATGATTCCATCACTCCAAACACAACACTTTATAGGTTGATATATACTTGGTTTTCTCAGAAGTACTTGTTGATGAAGAAGAGGTCTGAAGATGTTCAAGGAAGAGCTTCTGAGCTTGTGGAGACACTCAAGAAGGTGAAGGGTCAAGCTAGAGTTCATGCTTTGAAGGAGCTTCATCATGTTGTGGCTGTTCATGCTACTGCTCGTAAGTCTGTGATTGATGAAGGTGGTGTTTCTGTTTTGTCTTCTTTACTTGGTCCTTTTACTTCACATGCTGTTGGTTCTGAAGTTATTGGTATTCTTGTTAGTTTGACACTTGATTCTGAATCCAAAAAGAATCTTATGCAACCTGCTAAGATTTCTTTGATGGTTGATATCTTGAATGAGGGTTCAATTGAGACTAAAATCAATTGCACGCGGTTGATTGAATCGTTAATTGAGGAGAAAGATTTTCGCTCCGAGATTATCTCCAGCCATAGTTTATTGGTTGGATTGATGAGGCTTGTTAAGGATAAGAGACATAGCAATGGAATCTGTCCTGGATTAAGCCTCCTCAAAACAGTGTGCTTCTATAAAGAAGTTAAGATTTTGTTAGTTAGCATTGGTGCTGTTTCACAATTAGTTGAATTGTTGTCTGGTATGGACCATGATTGTTTGGAATTAGCCCTTTGTGTTTTGGATTCGTTGTCATCGATACCGGAAGGGAGGGTAGCTTTGAAGGAATGTGTTAACACCATACCTATCATGGTGAGACTTTTGATGAGGATCTCAGAAAGCTGCACTCAGTATGCATTGTCGATTTTGTGGTCTGTTTGCAAGCTTGCGCCCGAGGAGTGTTCCTCCATTGCCGTCGATGCAGGGCTTGCTGCGAAACTTCTGCTTGTGATTCAAAGTGGTTGCAATCCAATATTGAAACAACAAGCTGCTGAGCTTTTGAAACTATGTAGTTTGAATTATTCAGATACTATCTTCATTTCCAAGTGCAAGCTTACGAGAACCATCCAATGA 1356 0.4041 MPMYQPSKRDMVVGYEGGGDGQILDLDTAVKDGVLGGVDCGGVVGTGVVGEKLDLRKMIQELELCEVPSVFICPISLEPMQDPVTLCTGQTYERNNILKWFNMGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHHVVAVHATARKSVIDEGGVSVLSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLKTVCFYKEVKILLVSIGAVSQLVELLSGMDHDCLELALCVLDSLSSIPEGRVALKECVNTIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQAAELLKLCSLNYSDTIFISKCKLTRTIQ* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1419 451 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 41 450 - -
Mal6g1419 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 139 IPR013083 -
Mal6g1419 451 PANTHER WDSAM1 PROTEIN 41 450 IPR045185 GO:0061630
Mal6g1419 451 SUPERFAMILY RING/U-box 62 137 - -
Mal6g1419 451 CDD RING-Ubox_PUB 71 113 IPR045210 -
Mal6g1419 451 SMART Ubox_2 70 133 IPR003613 GO:0004842|GO:0016567
Mal6g1419 451 Pfam U-box domain 67 137 IPR003613 GO:0004842|GO:0016567
Mal6g1419 451 SUPERFAMILY ARM repeat 155 436 IPR016024 -
Mal6g1419 451 Gene3D - 140 443 IPR011989 -
Mal6g1419 451 ProSiteProfiles U-box domain profile. 66 140 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1419 Mal-Chr6 25450305 25451660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1419 1 451 U-box Gene Family AT3G49810 74.279 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1419 - - gmx:100779827 780.015