Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1411 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCTCTGAAAGCTGGAGTAGTCAAATACGGGGCTGGAAAGTGGCGTACCATACTTACAGACCCAGACTTCAGCAACATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACGGCAATATGGGGTTCCAGGCAGAAGGCAAAGCTTGCACTTAAAAAGAATCTACCTCCTCCGAAAACTGAAAATAACCACCACACAACCTCGACTGCCATAGTTCAATATAATCCAGAAGTTGCAGCTCCTAAGCCTCTGGCAGTTTCTGGTGGACTATCTACTTCCAAAGAACAAATATCAAGATTGGACAACCTTATATTAGAGTCTATTGTCAAGTTGAAGGAGCCAAAGGGTTCTGACATGGCCGCCATTGCTGCTTATATAGAGGATCAATACCGGTCTCCACCAAACCTCGTAAAGTTACTGTCATCAAAACTGAAGCATATGGTGGCAAGTGGCAAATTAGTGAAGGTAAATCATAAGTACAGGATTGCAACAAATTCAACAAAAACATCTGAGAAAAGAAGATGTTCTTCCTTGTTACTCCTGGAAGGGAGACCAAAAGATTCTCCAAAAGCAGAGAAAACTGATGTCAACGTCCTTTCAAAATCCCAAATTGATGTTGAGCTTTTAAAAATGAAGGGCGTGACAGCTCAAGAGGTGGCAGCAGCAGCTGCAAAAGCAGTTGCGGAGGCAGAAGCTGCCATTGCTGAGGCTGAGACAGCAGCAAGGGAGGCTGAGACAGCTGAAGCCGAAGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCTATGAAGGCACTAAAATGCAGAAGACTTAATATTTGGTAA 885 0.4429 MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSNILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKTENNHHTTSTAIVQYNPEVAAPKPLAVSGGLSTSKEQISRLDNLILESIVKLKEPKGSDMAAIAAYIEDQYRSPPNLVKLLSSKLKHMVASGKLVKVNHKYRIATNSTKTSEKRRCSSLLLLEGRPKDSPKAEKTDVNVLSKSQIDVELLKMKGVTAQEVAAAAAKAVAEAEAAIAEAETAAREAETAEAEAEAARVFAKAAMKALKCRRLNIW* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1411 294 Gene3D - 115 196 IPR036388 -
Mal6g1411 294 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mal6g1411 294 Pfam linker histone H1 and H5 family 122 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal6g1411 294 SMART sant 4 59 IPR001005 -
Mal6g1411 294 SUPERFAMILY "Winged helix" DNA-binding domain 115 193 IPR036390 -
Mal6g1411 294 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal6g1411 294 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Mal6g1411 294 CDD SANT_TRF 6 57 - -
Mal6g1411 294 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Mal6g1411 294 Coils Coil 241 275 - -
Mal6g1411 294 Gene3D - 2 59 - -
Mal6g1411 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal6g1411 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mal6g1411 294 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 292 - -
Mal6g1411 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1411 Mal-Chr6 25327438 25330330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1411 1 289 Single Myb Histone (SMH) Gene Family AT5G67580 53.559 3.34e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mal6g1411 Linker_histone 6.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1411 K09422 - gmx:778165 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1411 6 25327438 25330330 Mal5g3693 5 104654670 104657751 PCT