Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1408 ATGCATATGTATAACTGGAGTTGGATTTATAATTTTTTCAACTTTTGTTTAATTTCTTGTATTCTTTATTGGCTAGGAATCATGGAAGTGGAGGAGGAAAAGCCTATATCTTCTGTTATTCCACCAGTTATTACTCCTGTTGTGCCTCCGCTGGCACCGCTTCCAGTCCGGCCACCCGTGCCGCAAAATGGCGAGGTTGGGTCTAGTGATTCTGATTCGGACGGTGATGATGATGAAGCAGACACCAGAATTAATAAGGGTACTGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTGAGGGAGAGGCAGGAGAAAGCGATGCAAGATCTCATGATGAGGAGGCGTGCTGCTGCTCTTGCTGTTCCCACAAATGACATGGCGGTGAGGGCTCGTCTTCGCCATCTTGGTGAGCCGATTACCCTCTTTGGGGAGAGGGAGATGGAGAGACGAGACAGGTTGCGGATGATTATGGCAAAGCTGGATGCTGATGGTCAGCTGGAAAAGCTAATGAAAGCTCTTGAGGATGAAGAGGCTGCAACTTCTGCTCCAAAAGACGAGCCTGAGGATGATCTGCAATATCCTTTTTACACTGAAGGGTCAAATTCTCTCCTCGATGCAAGGATTGATATTGCTAAATATTCTTTAGTAAGGGCTGCATTGCGTATTCAACGTGCCCAGAGAAGAAGAGCTGATCCGGATGAAGATGTGGATGCGGAGATGGATTGGACATTGAAGCAGGCAGCAAATTTGAATCTCGAATTCAGTGAAATCGGAGATGATCGACCACTTACTGGTTGCTCGTTCTCCCGGGATGGAAAAGGGCTTGCTACATGTTCTCTAACTGGAGCTACCAAGTTGTGGAGTATGCCTAATGTAAAAAAAGTTTCTACCTTCAAGGGGCACACCGAGCGTGCTACTGATGTTGCTTATTCTCCTGTGCACAATCATTTAGCAACTGCCTCTGCTGACCGGACAGCAAAGTATTGGAATGATCAAGGATCTCCTTTGAGAACATTCGAGGGTCATCTTGATCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTATTTGGGCACTGCTAGTTTTGACAAGACATGGAGGTTATGGGACGTTGAAACAGGAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGCTTTTCATCATGATGGATCATTAGCTGCATCTTGTGGACTGGATGCTCTGGCTCGTGTATGGGACCTTCGAACTGGGAGAAGTGTTCTAGCACTAGAAGGTCATGTCAAACCAATTCTTGGCATCAGTTTTTCTCCTAATGGATATCATTTAGCCACTGGTGGTGAAGATAACACTTGTCGCATTTGGGACTTGAGGAAGAAGAAATCCTTGTACACCATTCCCGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCACAAGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACAGCCAAGGTTTGGTCAGGCCGGGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCTAAAGTTACTTCTCTGGATGTTCTTGGAGATGGCGGGTATATTGTTACAGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCGGCTCTACTAGTGAGCATGCTATGGATGTTGACTAA 1662 0.4585 MHMYNWSWIYNFFNFCLISCILYWLGIMEVEEEKPISSVIPPVITPVVPPLAPLPVRPPVPQNGEVGSSDSDSDGDDDEADTRINKGTGEYEISEESRLVRERQEKAMQDLMMRRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKALEDEEAATSAPKDEPEDDLQYPFYTEGSNSLLDARIDIAKYSLVRAALRIQRAQRRRADPDEDVDAEMDWTLKQAANLNLEFSEIGDDRPLTGCSFSRDGKGLATCSLTGATKLWSMPNVKKVSTFKGHTERATDVAYSPVHNHLATASADRTAKYWNDQGSPLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKPILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSGSTSEHAMDVD* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1408 553 ProSitePatterns Trp-Asp (WD) repeats signature. 359 373 IPR019775 -
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 466 508 IPR001680 GO:0005515
Mal6g1408 553 Pfam WD domain, G-beta repeat 421 456 IPR001680 GO:0005515
Mal6g1408 553 Pfam WD domain, G-beta repeat 504 541 IPR001680 GO:0005515
Mal6g1408 553 Pfam WD domain, G-beta repeat 334 372 IPR001680 GO:0005515
Mal6g1408 553 Pfam WD domain, G-beta repeat 462 499 IPR001680 GO:0005515
Mal6g1408 553 Pfam WD domain, G-beta repeat 383 414 IPR001680 GO:0005515
Mal6g1408 553 Pfam WD domain, G-beta repeat 295 331 IPR001680 GO:0005515
Mal6g1408 553 SUPERFAMILY WD40 repeat-like 251 540 IPR036322 GO:0005515
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 377 - -
Mal6g1408 553 Gene3D - 100 168 IPR036285 -
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 331 IPR001680 GO:0005515
Mal6g1408 553 PANTHER BNAC04G01920D PROTEIN 90 547 - -
Mal6g1408 553 ProSitePatterns Trp-Asp (WD) repeats signature. 443 457 IPR019775 -
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 424 458 - -
Mal6g1408 553 MobiDBLite consensus disorder prediction 55 89 - -
Mal6g1408 553 CDD WD40 263 541 - -
Mal6g1408 553 Pfam pre-mRNA processing factor 4 (PRP4) like 129 155 IPR014906 -
Mal6g1408 553 ProSitePatterns Trp-Asp (WD) repeats signature. 401 415 IPR019775 -
Mal6g1408 553 Gene3D - 424 551 IPR015943 GO:0005515
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 509 541 - -
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 509 541 IPR001680 GO:0005515
Mal6g1408 553 SUPERFAMILY PRP4-like 107 162 IPR036285 -
Mal6g1408 553 SMART WD40_4 459 499 IPR001680 GO:0005515
Mal6g1408 553 SMART WD40_4 375 414 IPR001680 GO:0005515
Mal6g1408 553 SMART WD40_4 292 331 IPR001680 GO:0005515
Mal6g1408 553 SMART WD40_4 417 456 IPR001680 GO:0005515
Mal6g1408 553 SMART WD40_4 250 289 IPR001680 GO:0005515
Mal6g1408 553 SMART WD40_4 502 541 IPR001680 GO:0005515
Mal6g1408 553 SMART WD40_4 333 372 IPR001680 GO:0005515
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 382 419 - -
Mal6g1408 553 PANTHER WD40 REPEAT PROTEIN 90 547 - -
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 331 - -
Mal6g1408 553 Coils Coil 160 180 - -
Mal6g1408 553 Gene3D - 237 423 IPR015943 GO:0005515
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 466 499 - -
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 424 465 IPR001680 GO:0005515
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 381 IPR001680 GO:0005515
Mal6g1408 553 SMART pr04_2 124 177 IPR014906 -
Mal6g1408 553 PRINTS G protein beta WD-40 repeat signature 443 457 IPR020472 -
Mal6g1408 553 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Mal6g1408 553 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Mal6g1408 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 423 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1408 Mal-Chr6 25288650 25294095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1408 344 540 U-box Gene Family AT2G33340 22.172 6.20e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1408 K12662 - gmx:100788948 865.529