Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1385 ATGAGTTGCAACGGTTGCCGTGTCCTTAGAAAGGGTTGTAGTGAGTCATGTATCTTACGCCCTTGTATTCAGTGGATTGATACCCCTGAAGCTCAAGGTCATGCCACTAGCTTTGTAGCCAAATTTTTCGGCCGTGCTGACCTTATGTCTTTCATTTCCAACGTCCCTCAACCACAAAGACCCGCTTTGTTTCAATCTTTGTTGTTTGAAGCGTGTGGAAGAACGGTGAACCCCATTAACGGTGCCGTTGGACTTTTGTGGACAGGAAACTGGCACGTGTGTCAAGCAGCGGTTGAAACGGTGCTCCGTGGCGGAACCCTTAAACCCATACCGGAGTTTCTCGGCTTAGACACTCTTACTTCCACCGTTGATGACGCGTCCGAAGGTGAAGTCACGTGCAACGACGCGCGGAAGATCCGAGATCCGAACCCGAATCTCCGGTTCATGAGTTCCGGTGGTAAACGCAAGAGATCAGGTGAAATGAAGCTTCCGGCGACGACTGATCTTAATCTCCAGTTGACGCCGAAGAACGTGCTGACCAACGGTTGCCGGAGAGAAATTCGCCGGCCGGGAACACCGTCGATGAATTCTGAGGAATCTGTAACGACGGTGACGTGCTTGGAAAGTGGGATCGGAGGAGATAACTACGTTCACGATGAAGAACGAAAAGTTCTCAACCTTTTTGTTTGA 690 0.5029 MSCNGCRVLRKGCSESCILRPCIQWIDTPEAQGHATSFVAKFFGRADLMSFISNVPQPQRPALFQSLLFEACGRTVNPINGAVGLLWTGNWHVCQAAVETVLRGGTLKPIPEFLGLDTLTSTVDDASEGEVTCNDARKIRDPNPNLRFMSSGGKRKRSGEMKLPATTDLNLQLTPKNVLTNGCRREIRRPGTPSMNSEESVTTVTCLESGIGGDNYVHDEERKVLNLFV* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1385 229 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Mal6g1385 229 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Mal6g1385 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 229 - -
Mal6g1385 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1385 Mal-Chr6 24829197 24830058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1385 1 229 AS2 family AT4G37540 55.242 3.78e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal6g1385 LOB 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1385 - - gmx:100802764 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1385 6 24829197 24830058 Mal5g3679 5 104390866 104391621 ECH
Mal6g1385 6 24829197 24830058 Mal6g1385 6 24829197 24830058 ECH
Mal6g1385 6 24829197 24830058 Mal1g0566 1 6447777 6448526 PCT
Mal5g3679 5 104390866 104391621 Mal6g1385 6 24829197 24830058 PCT