LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal6g1366	ATGTCTCACGAACAACACCAACCTCTGTTAGAAGAAACCGCTTACGATTCATCGGAGAAAGTTGTCGTTGTCGGAACCGATGAAGAAGAAGCCTACGAAGCTGACGTGGACTCTGGAGTAAGAATTCCACCGTTTTCATGGAAGAAGCTATGGCTATTCAGTGGACCAGGTTTTCTAATGAGTATAGCATTTCTGGATCCTGGAAACTTGGAAGGGGATCTTCAATCTGGTGCTATTGCTGGGTATTCGTTGTTATGGCTTCTTATGTGGGCTACAGCTATGGGGCTTTTGATTCAGCTTTTATCGGCGAGGTTAGGTGTTGCTACTGGGAGACATTTGGCTGAACTTTGTAGAGATGAGTATCCTACTTGGGCTAGGATTGTTCTTTGGTTGATGACTGAAGTTGCTTTGATTGGTTCTGATATTCAAGAAGTTATTGGGAGTGCTATTGCTATTAGGATTTTGAGTAATGGGATTGTTCCTCTTTGGGCTGGTGTTGTCATTACTGCTTTAGATTGTTTCATTTTTCTCTTTCTTGAGAATTATGGTGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTTATTGCTATAATGGCTCTCTCATTTGCATGGATGTTTGGTAAAGCAAAGCCCGATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATTCAACAAGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCACTTGTTCAATCAAGACAGGTTGACCCCAAAAAGAAAGGCCGCGTTCAAGAAGCTCTCAATTACTACTCCATAGAGTCGACCATTGCGCTTGTTGTCTCCTTTGTGATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCGAATAGGATCGGTCTTGTAAATGCAGGGCAGTACCTTCAGGAGAAGTATGGAGGTGGAGTATTCCCAATCCTTTATATATGGGGTATTGGGTTATTAGCAGCTGGTCAAAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGTGGATTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCGTTGATTACGCGAAGTTTTGCAATTGTCCCGACTATGATAGTTGCGCTTATATTTGATACCTCAGAGGGTTCATTAGATGTTCTGAATGAATGGCTTAATGTTCTTCAATCAGTGCAAATCCCCTTCGCGCTGATTCCCTTGCTTTGTTTGGTGTCGAAGGAACAGATAATGGGCACTTTCAAGATTGGCTCTGTGCTCAAGGCTATATCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCCGCTGAAGTGAGTGGAGCAGTGTTTACCACTGTTGTGTGCGCAATAACAGCGGCATACGTTGCATTCATAATTTACCTTATTTCAAGCGCCGTTACATTTTCACCTTGGCAAAGTTTAACTCGATCAAAGACAGTTACCACCACGGAGAGTTGA	1530	0.419	MSHEQHQPLLEETAYDSSEKVVVVGTDEEEAYEADVDSGVRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGIVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGKAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPKKKGRVQEALNYYSIESTIALVVSFVINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALIFDTSEGSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSVLKAISWLVAALVIVINGYLLLEFFSAEVSGAVFTTVVCAITAAYVAFIIYLISSAVTFSPWQSLTRSKTVTTTES*	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal6g1366	509	Hamap	Divalent metal cation transporter MntH [mntH].	36	458	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal6g1366	509	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	11	509	-	-
	Mal6g1366	509	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	11	509	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal6g1366	509	PRINTS	Natural resistance-associated macrophage protein signature	368	385	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal6g1366	509	PRINTS	Natural resistance-associated macrophage protein signature	184	205	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal6g1366	509	PRINTS	Natural resistance-associated macrophage protein signature	159	178	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal6g1366	509	PRINTS	Natural resistance-associated macrophage protein signature	402	421	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal6g1366	509	PRINTS	Natural resistance-associated macrophage protein signature	340	359	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal6g1366	509	PRINTS	Natural resistance-associated macrophage protein signature	129	155	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal6g1366	509	PRINTS	Natural resistance-associated macrophage protein signature	233	256	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal6g1366	509	Pfam	Natural resistance-associated macrophage protein	71	432	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal6g1366	509	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	48	426	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal6g1366	Mal-Chr6	24476258	24480033	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal6g1366	4	495	Inorganic Solute Cotransporters	AT2G23150	80.321	0.0	801

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal6g1366	K21398		-	gmx:100807811	889.412

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal6g1366	6	24476258	24480033	Mal6g1366	6	24476258	24480033	ECH
	Mal6g1366	6	24476258	24480033	Mal5g3655	5	103779018	103782131	PCT