Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1356 ATGAACACAGCAATAAGCAGAAAAGAAATGGATCGGATCAAAGGTCCATGGAGTCCTGAAGAAGATGAAGCACTTCAAAAACTCGTGGAGAAACACGGGCCGAGAAACTGGTCGATTATAAGCAAATCGATTCCAGGCCGGTCTGGGAAATCATGTAGGCTTCGTTGGTGTAATCAGCTTTCACCACAAGTTGAGCATCGGGCTTTTACGCCTGAAGAGGATGATACTATAATAAGAGCCCATGCCCGATTCGGAAACAAATGGGCTACAATAGCCAGGCTTCTCTCGGGCCGAACTGATAACGCGATTAAGAATCATTGGAACTCTACTTTGAAACGTAAGTGTTCTTCTATTATGATTGATGATTCATCATCTCCACCGTTGAAAAGATCTGTTAGTGCTGGTGCTGCTATTCCTGTTTCTACTGGTCTTTATATTAACCCTCCTTCACCTGGTTCTCCTTCTGGATCTGATGTGAGTGAGTCCAGTGTACCTATTGTGAACTCTCATGTTTACCGACCTGTGCCAACCAGAACCGTCGCGCCTCTACCTCTCGTAGAAACGACGTCGTCTTCGAAATCGAACGATCCTCCAACTTCGTTATCACTCTCACTTCCTGGTGTTGATTCTTCTTCTGAAGATTCAAACCGTGTAACTGAGGCTGTCAACACTGTACCACCACCTCCACCACCACCACCACCACCAAGTGCGATCCCTTTGATTCCGATAATGACTGCGCCGGTGCCGATGGCGGTTCCGATGCAACAATCGGGATCGGTGATGCCGTTTAATTTTAGTGCGGAGTTGTTGAGTGTGATGCAGGAAATGATAAGGACGGAGGTGAGGAGTTACATGGCGGGATTGGAGCAACAGAATGGGGTGTGTTTTCAAAAAGCTGATGATGGGATTAGGAATGCTTTGGTGAAGCGAATTGGAATTAGCAGGATCGATTCGTAA 957 0.465 MNTAISRKEMDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMIDDSSSPPLKRSVSAGAAIPVSTGLYINPPSPGSPSGSDVSESSVPIVNSHVYRPVPTRTVAPLPLVETTSSSKSNDPPTSLSLSLPGVDSSSEDSNRVTEAVNTVPPPPPPPPPPSAIPLIPIMTAPVPMAVPMQQSGSVMPFNFSAELLSVMQEMIRTEVRSYMAGLEQQNGVCFQKADDGIRNALVKRIGISRIDS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1356 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Mal6g1356 318 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Mal6g1356 318 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Mal6g1356 318 MobiDBLite consensus disorder prediction 187 236 - -
Mal6g1356 318 SMART sant 65 113 IPR001005 -
Mal6g1356 318 SMART sant 13 62 IPR001005 -
Mal6g1356 318 CDD SANT 68 111 IPR001005 -
Mal6g1356 318 Gene3D - 13 65 - -
Mal6g1356 318 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Mal6g1356 318 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Mal6g1356 318 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Mal6g1356 318 PANTHER MYB PROTEIN-RELATED 5 281 - -
Mal6g1356 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Mal6g1356 318 MobiDBLite consensus disorder prediction 187 222 - -
Mal6g1356 318 Gene3D - 67 130 - -
Mal6g1356 318 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 5 281 - -
Mal6g1356 318 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1356 Mal-Chr6 24211405 24212361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1356 6 317 MYB Transcription Factor Family AT4G37260 51.622 3.87e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal6g1356 Myb_DNA-binding 4.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1356 6 24211405 24212361 Mal5g3643 5 103400782 103401606 ECH
Mal6g1356 6 24211405 24212361 Mal6g1356 6 24211405 24212361 ECH
Mal5g3643 5 103400782 103401606 Mal6g1356 6 24211405 24212361 PCT