Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1352 ATGGAAACCGCTCCTCCATCTTCGAAGACTGAACATCACTCCACCAAAATACCTGCTGAAAATGACAATGCACGTGATTCACCATCCTTGTCACCGGCTTCTAGTATATCTTCCTGGGCAAGAAATCTGAGGTTTGGGGCAGCAGATCAGAACTCACAGACTGAGAACAGTGGCATGTCGGCTTTCGCTCGTCTTACTAGTGGGATTGGACTACGAAGTCCCTCAAATGAGACTGCTACGAGTAATTCAGGAGCTGAGCAACCTAATTTGATTGAATCATTCACCAAAGGGTTGGTGGACTCTTCCAAGAGTGCAGTAAAGGCAGTGCAGACCAAAGCACGACATATTGTTTCTCAAAATAAACGCAGATATCAGGAAGGAGGATTTGATTTGGATATGACCTACATCAATGAAAATATAATAGCTATGGGATTTCCTGGTGGTGATTTTAGCTCTGGAATTTTTGGGTACATTGAGGGGTTCTATCGAAATCACATGGAAGAAGTAATCAAGTTTTTTGAAACTCATCATAAGGGAAAGTACAAAGTATACAATCTTTGTTCAGAGAGGTTGTACGATGGATCACTTTTCCAGGGGAAGGTTGCAAGTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATCCAAAATGTGGTCGTTGTTCATTGTAAAGCTGGTATGGGAAGGACAGGACTGATGATTTGTAGCCTTCTTTTGTATCTTAAGTTTTTCCCCACTGCTGAGGAAGCCATTGATTCCTTTAACCGGAAAAGATGTGTAGATGGAAAGGCTCTAACTCTCCCAAGTCAAATTAGATATGTCAAATACTTTGAGCGGACTTTAACACACTTCAACGGAGAAGTCCAGCCCGGACGAAGGTGTATGCTGAGAGGGTTTCGGCTTCACAAATGCCCTTATTGGGTTAGACCATCCATTACAATTTCTGATCACAACGGAATTCTTTTCACAACGAGAAAGCATCCCAAGACAAAGGATCTAATGCCAGAAGATTTCTGGATCAATGCAGCAAAGAAAGGAATTGTGGTCTTTGCATTACCAGGGGAGCCAGGTCTGACAGAATTGGTCGGGGACTTCAAAATTCATTTTCATGATCGACAGGGAGATTTCTACTGTTGGATGAATACAACAATGATAGAGAACAGAAAAATTTTAGATGGCTCAGATCTTGATGATTTTGACAAGAGAAAGATCCCCGCTCCAGGGTTCCAGGTCGAAGTTGTGATGATAGACTATAATGGCACGCTACCTGGAAAAGTCAATCCTGCAAGCAAAGGATCTGATGGTAACAAAATCAAGGCTTTATCCGGTGCAAAGCCTACATCTAATTCAAGTGAGAGTAAGATACCTAAAAATGGAGATGATGATGTATTCTCAGATAGTGACGAAGAGGAGACCAAGGGAACACAAAGGAGGGAAGCTGCCACTGATTACAAATATACGGAACCTCATAAAGTATCTGTGGCCACGACTGACCATGTAGGGATGTTGTCACACGCAACGGATCAGTTGTCACTCCAGCAGCATAATGAACGTACCGAAAACAATGCTTCTGAAGCATCAACTACTGATAAACTTCATAATATTCATGCAGGCCCTGACACCACCAACATGGACTCTATAGGGTCAAGTGAATTCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGGAGATGAAGATTTTGAGAGTGATTCAGAGGAGGCGGGTTAA 1785 0.4213 METAPPSSKTEHHSTKIPAENDNARDSPSLSPASSISSWARNLRFGAADQNSQTENSGMSAFARLTSGIGLRSPSNETATSNSGAEQPNLIESFTKGLVDSSKSAVKAVQTKARHIVSQNKRRYQEGGFDLDMTYINENIIAMGFPGGDFSSGIFGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVASFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLYLKFFPTAEEAIDSFNRKRCVDGKALTLPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHNGILFTTRKHPKTKDLMPEDFWINAAKKGIVVFALPGEPGLTELVGDFKIHFHDRQGDFYCWMNTTMIENRKILDGSDLDDFDKRKIPAPGFQVEVVMIDYNGTLPGKVNPASKGSDGNKIKALSGAKPTSNSSESKIPKNGDDDVFSDSDEEETKGTQRREAATDYKYTEPHKVSVATTDHVGMLSHATDQLSLQQHNERTENNASEASTTDKLHNIHAGPDTTNMDSIGSSEFKAIAADASVFSFGDEDFESDSEEAG* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1352 594 MobiDBLite consensus disorder prediction 1 35 - -
Mal6g1352 594 MobiDBLite consensus disorder prediction 21 35 - -
Mal6g1352 594 MobiDBLite consensus disorder prediction 1 20 - -
Mal6g1352 594 SMART PTEN_C2_2 306 434 IPR014020 -
Mal6g1352 594 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 378 432 IPR035892 -
Mal6g1352 594 CDD PTP_PTEN 132 296 IPR045101 GO:0016791
Mal6g1352 594 ProSiteProfiles C2 tensin-type domain profile. 308 435 IPR014020 -
Mal6g1352 594 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 4 589 - -
Mal6g1352 594 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 236 275 IPR000387 GO:0016311|GO:0016791
Mal6g1352 594 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 4 589 - -
Mal6g1352 594 MobiDBLite consensus disorder prediction 486 503 - -
Mal6g1352 594 ProSitePatterns Tyrosine specific protein phosphatases active site. 238 248 IPR016130 GO:0016311|GO:0016791
Mal6g1352 594 MobiDBLite consensus disorder prediction 529 563 - -
Mal6g1352 594 Gene3D Protein tyrosine phosphatase superfamily 107 304 IPR029021 -
Mal6g1352 594 ProSiteProfiles Phosphatase tensin-type domain profile. 122 301 IPR029023 -
Mal6g1352 594 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 135 301 IPR029021 -
Mal6g1352 594 MobiDBLite consensus disorder prediction 443 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1352 Mal-Chr6 24162989 24168484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1352 21 589 Protein tyrosine phosphatase (PTP) family AT3G19420 62.542 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1352 K01110 - gmx:100801622 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1352 6 24162989 24168484 Mal6g1352 6 24162989 24168484 ECH
Mal6g1352 6 24162989 24168484 Mal1g0484 1 5595144 5600101 PCT