Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1340 ATGGAAGGTGGTGAAAGAGGAAAAGGAGAGAGAAAGAGAAACGGTGGTGGTGGTGGTGAAGGAGAGAGAAGATACAAAGGAATTCGTATGAGAAAGTGGGGAAAATGGGTAGCTGAAATTCGAGAACCAAACAAACGTTCACGAATTTGGCTAGGTTCATATTCTACACCTATCGCCGCCGCTAGAGCTTACGACACCGCTGTTTTCTATCTCCGGGGACCATCAGCTCGTCTCAATTTCCCGGAGCTACTCGCCGGTGAAAACAACGCGGTTGTTGGTGGCGGAGATATGTCGGCTGCTACTATAAGAAAGAAAGCTACTGAAGTTGGTGCTAGGGTTGATGCTCTTCAAGCAACTGTTCATCACCATCACCATCATCAGCATAACCGGAACCAGCATCGTGTTATGCCGGTTCCGGAGATGCTTAACGGTGATGGTGATTTTGCTGAGAGGGTTGATTTGAATAAGGTTCCTGAACCGGAGAGTTCGGGTTCTGAGTGGGATGTTAATTGA 513 0.4776 MEGGERGKGERKRNGGGGGEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPELLAGENNAVVGGGDMSAATIRKKATEVGARVDALQATVHHHHHHQHNRNQHRVMPVPEMLNGDGDFAERVDLNKVPEPESSGSEWDVN* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1340 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 4 163 - -
Mal6g1340 170 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Mal6g1340 170 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Mal6g1340 170 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Mal6g1340 170 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
Mal6g1340 170 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Mal6g1340 170 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Mal6g1340 170 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Mal6g1340 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 4 163 - -
Mal6g1340 170 MobiDBLite consensus disorder prediction 1 23 - -
Mal6g1340 170 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1340 Mal-Chr6 23974238 23974750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1340 22 168 AP2-EREBP Transcription Factor Family AT5G67190 60.479 1.43e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g1340 AP2 4.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1340 K09286 - gmx:100783682 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1340 6 23974238 23974750 Mal6g1340 6 23974238 23974750 ECH