Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1338 ATGTGGGATCTGAATGACTCACCCGATGAGAGAAAAAACTATGAATCAGAAGGGTGTTCAATGGAGGGTGATGAAGTTGAAGTTGATGAAAAAGGAAAAAGAGTTGGATCTGTTTCAAATTCAAGTTCATCTGCAATAGTAATAGAAGATGGATCGGAAGAAGAAGATGGTATGAAGAAAAAGAGTAGTAAAATATTTGGATTTTCAATGGATGATAGTAGTGGTGAGTGTCCACCGGTGACTAGACAGTTTTTTCCGGTGGAGGATTCTGAGATGACTACGGTGGTTGATTCTTCTTCCGGTGGTGGTGGTGGTGGTGGAAGTTCTTCTTTTCCTAGAGCTCATTGGGTAGGTGTTAAATTTTGTCAATCAGAAACTGTTAACGGTGGTAAAATAGTTGAAGCGTCACAACCGATGAAGAAGAGTCGTAGAGGACCAAGGTCCAGAAGTTCTCAGTATAGAGGTGTTACTTTTTACAGAAGAACTGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCAATTAAATTCAGAGGAGTAGAGGCAGACATAAATTTCAACATAGAAGATTATGAAGAGGACTTGAAGCAGATGAGCAATTTAACAAAGGAAGAATTTGTGCATGTACTTCGTCGACAAAGCACTGGATTTCCAAGAGGAAGTTCAAAATATAGAGGTGTGACTTTGCATAAATGTGGAAGATGGGAGGCTCGAATGGGTCAATTCTTAGGGAAAAAGTATGTTTATCTGGGTTTATTTGACACTGAAATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATCAAATGCAATGGCAAAGAGGCTGTGACCAATTTTGATCCCAGTATCTATGATAATGAGCTTAATTCTGAATCCTCAGGTAACGCCGCGGATCACAATCTGGATTTGAGTTTGGGTAATTCAAGTTCTAAATGTAGCAATAATCAAGCATTTGGGAATCAAAACACAAATGCCGCGACTGATCAATACATGGCACCGGAATCAAATTGGCGGAATGGGGGAATCAAGCCTAAGCCTGTGAATATACTACCAAAACCATGTGGTATGATTAGTAACATGGAAGGCTATGTAAGGGATGGATATGGAGAGAGTGAAGCTTTGAGGATGCTAAGCCAAACTCACCTTCATCAATCTCAAGTCACTAATGAAATGCATAGATTTGGTCCCTACAGGTCACCTGTAATTGAACAACACCCTCAAATGCTTCACAATTTTTCACATCTTCACCCCTCAAATTTTCATGTTTCGAGCAGCAGCAGCAACGGAGGCCGAATTGGAAGTGATTTAACATTATCGATGTCCGATCAACAAAAGTGGCAAACGGGGCCTCCTCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAAATAAGACCCTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGTTTCCACACTCTCATGAGACCCTCTTGA 1536 0.4128 MWDLNDSPDERKNYESEGCSMEGDEVEVDEKGKRVGSVSNSSSSAIVIEDGSEEEDGMKKKSSKIFGFSMDDSSGECPPVTRQFFPVEDSEMTTVVDSSSGGGGGGGSSSFPRAHWVGVKFCQSETVNGGKIVEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGNAADHNLDLSLGNSSSKCSNNQAFGNQNTNAATDQYMAPESNWRNGGIKPKPVNILPKPCGMISNMEGYVRDGYGESEALRMLSQTHLHQSQVTNEMHRFGPYRSPVIEQHPQMLHNFSHLHPSNFHVSSSSSNGGRIGSDLTLSMSDQQKWQTGPPPPHLLATAAASSGFPPQIRPSSSQGWLQKNGFHTLMRPS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1338 511 SUPERFAMILY DNA-binding domain 243 303 IPR016177 GO:0003677
Mal6g1338 511 CDD AP2 152 209 IPR001471 GO:0003700|GO:0006355
Mal6g1338 511 PRINTS Ethylene responsive element binding protein signature 283 303 IPR001471 GO:0003700|GO:0006355
Mal6g1338 511 PRINTS Ethylene responsive element binding protein signature 245 256 IPR001471 GO:0003700|GO:0006355
Mal6g1338 511 SMART rav1_2 152 214 IPR001471 GO:0003700|GO:0006355
Mal6g1338 511 SMART rav1_2 244 307 IPR001471 GO:0003700|GO:0006355
Mal6g1338 511 MobiDBLite consensus disorder prediction 486 502 - -
Mal6g1338 511 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 509 - -
Mal6g1338 511 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 509 - -
Mal6g1338 511 Pfam AP2 domain 243 292 IPR001471 GO:0003700|GO:0006355
Mal6g1338 511 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Mal6g1338 511 Gene3D AP2/ERF domain 151 210 IPR036955 GO:0003700|GO:0006355
Mal6g1338 511 Gene3D AP2/ERF domain 243 302 IPR036955 GO:0003700|GO:0006355
Mal6g1338 511 CDD AP2 243 303 IPR001471 GO:0003700|GO:0006355
Mal6g1338 511 ProSiteProfiles AP2/ERF domain profile. 152 208 IPR001471 GO:0003700|GO:0006355
Mal6g1338 511 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Mal6g1338 511 MobiDBLite consensus disorder prediction 1 59 - -
Mal6g1338 511 ProSiteProfiles AP2/ERF domain profile. 244 301 IPR001471 GO:0003700|GO:0006355
Mal6g1338 511 MobiDBLite consensus disorder prediction 1 34 - -
Mal6g1338 511 MobiDBLite consensus disorder prediction 463 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1338 Mal-Chr6 23880328 23883387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1338 1 331 AP2-EREBP Transcription Factor Family AT4G36920 69.477 5.07e-141 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mal6g1338 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1338 K09284 - gmx:100786333 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1338 6 23880328 23883387 Mal6g1338 6 23880328 23883387 ECH
Mal6g1338 6 23880328 23883387 Mal5g3624 5 102870836 102873624 PCT