Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1331 ATGGCCAACCAATACCGTTTAGGAAACCGACAAAATGAAGAAGTTCGTGACGCAAGACATCTTAGATACATGTGGGCTATCAATTCTGGAGATAATCATGTTGCTTCTTCTACCTCTGCTCCAAGACTTTTTGGATCATCTCTTAACATCAATCCAACTATTAATGGAGCTGGAGCTGCTGCTGGAAACAATAATAGTAATGCGAATTCCATTTTGTCTTTCAACGGTGGAATTAACACCACCACCACCACCACTATTGCTGCTGCTACTACTACAATTGGTACTAGGAGCGATGATCGGCGTCGTCGTGCCAATTCATCGTTAAAAAGAAGTAGAACAACACCAAATGCTATCAATAGAGGTGAAAGTTCTTCTTCTCAAGGTGATGGAAGTTCTAGCAGAAGACCGATCACTTTTCCTCCTTCTCCTCCTATTCATGCTCAGCAAGACAATATGTCTTCTTCTTCATCTTCATCAACATTTTGGAGGAACTATATTGGTAACAGTTCCATTTCAACTATGTTTAACCATCACACGGCGGATGAAGTTGTTGCTGCAGGTGCAGCAGGACCAAGTAACACTATTAATAGTGTTCCTCATGGTCCACCAGGTAATTTTTTTGAAGATCATAATTCATCTCATTATGATTTTCCTACTAGGCCGTTTGATATTCTTTGTCTATTACATCGTCAAGAACATCCTTGGACGAACTTCAATGCAGGAAGAAATAATCCTTCTCCGGCCTCTGCAGCAACAGGAGGAGCAGGAGGTTCTTCTTCTCGAAGCAGAGGCTGGGGGCGGAATCATGATACTATTCATGAACAAGGAATGAATGAAGAATATGTTGAAAGCACAGGCTGGGGTCGTTTGAATGGACTTCCAACTAATGCTGCTGGGAGGCCTAGTAGTTCTGTACCACCACAACGACCACCACAATCTTCAGATCCTTCACCGAGTAATTACCGGCAAAACCCTCCTCCTAGATCAGAGATTCCAACTCGTCCTGGCGGTAGTAACCGCATTTCCATTTCAACTTCTCCTGAACTTAGGGCTGAGAGGAACACGCTTCGGGAGGAGCTTTTTAGCACCCTACAACATCTTCGCAACGGTGGCTCTGTGCGGATACAGGACTTGTTAATACTTGACTACTCAATTGTGCTAAATCTATTGGACTCTCAGGAGCTCATTGATCAACTAAATGATTCAGAGAATTGGCCGTACGAGATAATTTCGGCTCTTGAGAGACAAGTGGGCAGTGTCGAGACAGGACTGACACAACAAGAAATCTCCAGGTACATTCTACAAGAGACTTACCGGGTCAATCTTGAGGAAACATGTACTCTGAATCAAACATGCACCATATGCCAGGAAGACTATGTGGAGGGGGAGAGAATTGGTAGAGTTGATTGTATGCACAGTTTTCATCTTGATTGCATCAAACAATGGTTGGAGCAGAAGAATGTTTGTCCAATCTGCAAGCAAACAGCTCTGGAAATTGACGAAGATGAAAGCTAA 1515 0.4323 MANQYRLGNRQNEEVRDARHLRYMWAINSGDNHVASSTSAPRLFGSSLNINPTINGAGAAAGNNNSNANSILSFNGGINTTTTTTIAAATTTIGTRSDDRRRRANSSLKRSRTTPNAINRGESSSSQGDGSSSRRPITFPPSPPIHAQQDNMSSSSSSSTFWRNYIGNSSISTMFNHHTADEVVAAGAAGPSNTINSVPHGPPGNFFEDHNSSHYDFPTRPFDILCLLHRQEHPWTNFNAGRNNPSPASAATGGAGGSSSRSRGWGRNHDTIHEQGMNEEYVESTGWGRLNGLPTNAAGRPSSSVPPQRPPQSSDPSPSNYRQNPPPRSEIPTRPGGSNRISISTSPELRAERNTLREELFSTLQHLRNGGSVRIQDLLILDYSIVLNLLDSQELIDQLNDSENWPYEIISALERQVGSVETGLTQQEISRYILQETYRVNLEETCTLNQTCTICQEDYVEGERIGRVDCMHSFHLDCIKQWLEQKNVCPICKQTALEIDEDES* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1331 504 SMART ring_2 452 492 IPR001841 -
Mal6g1331 504 MobiDBLite consensus disorder prediction 109 136 - -
Mal6g1331 504 MobiDBLite consensus disorder prediction 335 349 - -
Mal6g1331 504 MobiDBLite consensus disorder prediction 286 349 - -
Mal6g1331 504 ProSiteProfiles Zinc finger RING-type profile. 452 493 IPR001841 -
Mal6g1331 504 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 4 498 - -
Mal6g1331 504 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 498 IPR045191 GO:0061630
Mal6g1331 504 MobiDBLite consensus disorder prediction 144 159 - -
Mal6g1331 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 497 IPR013083 -
Mal6g1331 504 MobiDBLite consensus disorder prediction 238 270 - -
Mal6g1331 504 MobiDBLite consensus disorder prediction 89 159 - -
Mal6g1331 504 SUPERFAMILY RING/U-box 433 498 - -
Mal6g1331 504 MobiDBLite consensus disorder prediction 304 332 - -
Mal6g1331 504 MobiDBLite consensus disorder prediction 238 265 - -
Mal6g1331 504 Pfam Ring finger domain 451 493 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1331 Mal-Chr6 23788828 23791618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1331 353 498 C3H Transcription Factor Family AT2G15530 36.667 3.75e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1331 - - mtr:MTR_5g016960 439.113