Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1330 ATGTCTTCTCAGACTCAAATGAATAGTACTATTACTACTCAGACTCAAATGAATAGTCCTCCTCATGATCCAACAGGTTTATTTGAACATGATGATCCAATACCATATAATAATTCATCTCGTTGTGATTTTCCCACTAGGCCGCTCGATATTATTATCGCTTTAGGTCATCAAGAAGATCCTTCGACGAACTTCCCTAGAGGAAGACATGATCCTTCTCCTACCTCTGCATCGTCTCTATATCCCTCCGCAACAACAGGAGGAGCATCAGTTTCTTCTTCTCGAGGCACAGGTCTGGGGCAAAATGGTGATAATAACAACAACTTTGAATTCTTTGATACTACTATTCGACAGGGAACGGTTGATGCTTATGATGAAAGCACAACAAATGTTCAACAACTTGCAATGTTATTGCCAGAAAGTCGTGTGAATGGACTTCTTGCTCAAACTATTATTCCTGTTAGGCCTAGTAGTTCTATACCACCACCACAACGACCACTAACGACCTCGGATCCTTCGCCGAGTAATTACCGTCTAAACCCTCCTCCACCTCCTCCTGGACCGGAATTTACTACTGATGTACAAACTGATCAGAACATTCAGACTGATTCAGGATTGCCTAGATCGGAGAATGTAGCTCTCCCTGGCGGCAATAACCGTAACTTTTCAACTTCTCAGGAACTTATGGCAGAGAGGAATTGGCTCACGGATGAGGATTGGATGCTACTTGATTATTCAATCTTGCTAAATCAGTTAATTGATTCTCAAGAACGCTTAGAACGCTTAGAGCAGATATATAATTCAGAGGATAATTCAATGGTTGATTGGATGTACGAGTTATTTGAAACGGGGCTGACAGAGCAAGGGCTGACAGAGCAAGAAATCCTTAGATGCATCCACCAAGAGATTTATCAGTCCAAACCTGAGGAAACAAGCACAATGAATCAAACGTGCACCATATGTCAGGAAGACTATGTGGAGGGGGAGAGAATTGGTAGAGTTGATTGTATGCACAGTTTTCATCTTGATTGCATCAAACAATGGTTGGAGCAGAAGAATGTTTGTCCAATCTGCAAGCAAACAGCTCTGGAAATTGATGAAGATGAAAGCTAA 1113 0.4169 MSSQTQMNSTITTQTQMNSPPHDPTGLFEHDDPIPYNNSSRCDFPTRPLDIIIALGHQEDPSTNFPRGRHDPSPTSASSLYPSATTGGASVSSSRGTGLGQNGDNNNNFEFFDTTIRQGTVDAYDESTTNVQQLAMLLPESRVNGLLAQTIIPVRPSSSIPPPQRPLTTSDPSPSNYRLNPPPPPPGPEFTTDVQTDQNIQTDSGLPRSENVALPGGNNRNFSTSQELMAERNWLTDEDWMLLDYSILLNQLIDSQERLERLEQIYNSEDNSMVDWMYELFETGLTEQGLTEQEILRCIHQEIYQSKPEETSTMNQTCTICQEDYVEGERIGRVDCMHSFHLDCIKQWLEQKNVCPICKQTALEIDEDES* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1330 370 MobiDBLite consensus disorder prediction 1 40 - -
Mal6g1330 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 71 364 IPR045191 GO:0061630
Mal6g1330 370 SMART ring_2 318 358 IPR001841 -
Mal6g1330 370 MobiDBLite consensus disorder prediction 68 106 - -
Mal6g1330 370 SUPERFAMILY RING/U-box 303 364 - -
Mal6g1330 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 369 IPR013083 -
Mal6g1330 370 MobiDBLite consensus disorder prediction 176 190 - -
Mal6g1330 370 MobiDBLite consensus disorder prediction 191 220 - -
Mal6g1330 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 71 364 - -
Mal6g1330 370 Pfam Ring finger domain 317 359 IPR001841 -
Mal6g1330 370 ProSiteProfiles Zinc finger RING-type profile. 318 359 IPR001841 -
Mal6g1330 370 Coils Coil 245 265 - -
Mal6g1330 370 MobiDBLite consensus disorder prediction 59 106 - -
Mal6g1330 370 MobiDBLite consensus disorder prediction 1 22 - -
Mal6g1330 370 MobiDBLite consensus disorder prediction 154 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1330 Mal-Chr6 23686861 23689715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1330 217 364 C3H Transcription Factor Family AT2G15530 36.943 9.47e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1330 - - mtr:MTR_5g016960 322.398