Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1328 ATGGAAGATAATCATCATAACAACAACAACATGTCACTCTCTTCCTCACAAGATGAAATCTCTCTTTTTCTTCATCAAATTCTTCTCCGTTCATCATCTTCTTCTATGACTGGATCCATGATCAACTCAAACCCACTTCAAGATGGGAAGATCTCAGCCCTTGATTCAACTTCTAGACCAAACCATGCTTTAAATGTCTCTTCCTCTTCTGTTGGTGGAGGAGGACTCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGAGGGTATTGAAGCATTAACTGAAGAAGTTCCAACAAAATCTGGTCCTTCTAGGAGTTCTTCAAAAAGAAGCAGAGCTGCAGAAGTTCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATCAATGAGAAAATGAAGGCTTTACAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCATTGAGAAATGGATTGAGTTTGCATCCTATGTACTTTCATGAAGGCTTGCATTCTCTGCCTTTGTCTCGGATGAGTACGGAGTTGAGTGAAGGAAACAGGTCTACCCCTTTAAACATGACATCTACTCTGCCTCATCCCCTAGACAACCCCTTGCTCTATGCATCCAATCTATCTAACAAAAACACATTGCCGAGTCAGTCATCAATGTCTTCCTACCCTTCATATATTAACAACACAGAAACTTCTTTTGGGGTAGAATCTGGAATCTCACCACATAAAAAACGTCTTCAACGATCTTCAGAGTCAATGCACGGTGAAGACATGTTGCAGCACCAGCAATTGAATGCAATCGATTCTTTTACGAATCTATTAGGCGGTTCTCAAGTTGTCAAAGAATTCGAGTCGGGCGCAATGGCTACACCTACTACTAACAATTCTTTGCAAACATGTGTTGCCGGAAGAGGTCAATCAGGAGCGATCATGAGAAGTAGTGAACCCAACATCGTATTTACATCGCAGTTAAGTAGGTAA 1044 0.4033 MEDNHHNNNNMSLSSSQDEISLFLHQILLRSSSSSMTGSMINSNPLQDGKISALDSTSRPNHALNVSSSSVGGGGLSGNDTDEYDCESEEGIEALTEEVPTKSGPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLSLHPMYFHEGLHSLPLSRMSTELSEGNRSTPLNMTSTLPHPLDNPLLYASNLSNKNTLPSQSSMSSYPSYINNTETSFGVESGISPHKKRLQRSSESMHGEDMLQHQQLNAIDSFTNLLGGSQVVKEFESGAMATPTTNNSLQTCVAGRGQSGAIMRSSEPNIVFTSQLSR* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1328 347 PANTHER TRANSCRIPTION FACTOR SPATULA 12 289 - -
Mal6g1328 347 SMART finulus 120 169 IPR011598 GO:0046983
Mal6g1328 347 CDD bHLH_AtPIF_like 115 176 - -
Mal6g1328 347 MobiDBLite consensus disorder prediction 51 76 - -
Mal6g1328 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Mal6g1328 347 Pfam Helix-loop-helix DNA-binding domain 118 164 IPR011598 GO:0046983
Mal6g1328 347 MobiDBLite consensus disorder prediction 112 126 - -
Mal6g1328 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 174 IPR036638 GO:0046983
Mal6g1328 347 Coils Coil 153 173 - -
Mal6g1328 347 Gene3D - 108 172 IPR036638 GO:0046983
Mal6g1328 347 MobiDBLite consensus disorder prediction 51 126 - -
Mal6g1328 347 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 289 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1328 Mal-Chr6 23664750 23667736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1328 79 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 49.327 7.08e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal6g1328 HLH 6.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1328 - - gmx:100797351 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1328 6 23664750 23667736 Mal6g1328 6 23664750 23667736 ECH