Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1320 ATGAACTGGGTTCGCGGTAGGATGCTAGGTAGTGGCAGCTTCGCCACCGTCAACTTAGCCACACACACAAACGATTCCGCTGCCTTTCCGTCTCTCACTGCCGTCAAATCCTCCGATACTTACAGCTCCCATTTGCTAAAAAACGAGAAACAAGTACTCGACTGTTTAGGATCATCTAGACATATTATCAGATGTTTTGGCGAAGATCAAACTTTTGAAGATGGTGAAGAATCTTATAATATTTTTCTTGAATACGCCGAAGGTGGTACTCTATCCGATCAGCTCAAAAATCATGGTGGTAATTTCCCGGAAACCCTCGTTCGCCGTTACACAAAGTCGATCCTTGAAGGACTCAAAGATATTCATGAAAACGGTTTTGTTCATTGTGATGTGAAGCTAGATAACATTCTGGTATTTGACAATGGTGAAGTGAAGATTTCAGATTTTGGTCTTGCAAAGGCGAAAGGTTTAAAACATGGTGGAAAATTGGAATGCAGGGGAACTCCATTGTATATGGCGCCGGAAGCAGTGAATGAGAATGTTTATGAATCGCCGGCAGATATATGGGCTCTTGGATGCGCCGTTGTGGAGATGGTTACTGGAAAATCTGCATGGAACGTAAGCAGCACGTCAAATATGTGGGCATTGTTGGTTCGAATTGGGGTGGGAGAAGAAATACCGTTGATTCCAAAAGAATTATCACAAGAAGGGAAAGATTTTCTTGAAAAGTGTTTTGTTAAGGATCATTTGAAGAGATGGAGTGCAGAGATGCTTTTGAAACACCCTTTTATCTGCGATGATGAGTCATCATTGCGATCACTATCTCCAAGGACACACTTCGATTTTCCTTCTTTTTGTTCGCCGGTAGAGAGGCTTCAACAACTAATTGTAGATCATAGACCGTTAGATTGCTCAGAATTGGATGGTTGGTATGTTGTTCGGTCAAATTAG 951 0.4206 MNWVRGRMLGSGSFATVNLATHTNDSAAFPSLTAVKSSDTYSSHLLKNEKQVLDCLGSSRHIIRCFGEDQTFEDGEESYNIFLEYAEGGTLSDQLKNHGGNFPETLVRRYTKSILEGLKDIHENGFVHCDVKLDNILVFDNGEVKISDFGLAKAKGLKHGGKLECRGTPLYMAPEAVNENVYESPADIWALGCAVVEMVTGKSAWNVSSTSNMWALLVRIGVGEEIPLIPKELSQEGKDFLEKCFVKDHLKRWSAEMLLKHPFICDDESSLRSLSPRTHFDFPSFCSPVERLQQLIVDHRPLDCSELDGWYVVRSN* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1320 316 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 290 - -
Mal6g1320 316 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g1320 316 Pfam Protein kinase domain 5 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g1320 316 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g1320 316 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Mal6g1320 316 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 290 - -
Mal6g1320 316 CDD STKc_MAPKKK 2 264 - -
Mal6g1320 316 SUPERFAMILY Protein kinase-like (PK-like) 2 289 IPR011009 -
Mal6g1320 316 Gene3D Transferase(Phosphotransferase) domain 1 2 294 - -
Mal6g1320 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1320 Mal-Chr6 23539259 23540209 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1320 1 314 MAP Kinase Kinase Kinase AT5G67080 51.585 2.32e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mal6g1320 Pkinase 1.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1320 - - gmx:100797177 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1320 6 23539259 23540209 Mal6g1320 6 23539259 23540209 ECH
Mal6g1320 6 23539259 23540209 Mal5g3610 5 102586485 102587474 PCT