Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1313 ATGAATCAAATCTTGTGGATTCCTTGTGACATCTTATGCAATTGTAATGAAATTACAGTATTAGATAAGGAGGCCAACATCTTCTTATATTTTTCCTCCGTGCCTATTTCTCCTAACATATTAAACCAAATCTTGCCCAAGATTGGAGAATATGCTGAGGAGATGGTCACAAATAACAATGAAGGTCATAATATGTGGGAGATAGATGTGACACTTGATGTTATGACATACTATATTGAAGATCATGAAGATGTGGAAGCCCTAATTGCTGTGGAAAGCTTGGAAAAAGTTGGAAAGGATCATTATTCTTGTTACTATACAAATCAATGTCCAATTTGTTTGGAAGAGTTCTTCAATGGGTCAAAGCCAGAACATGTTATGACCAAATGCTTCCATGTTTTTCACAAAGAGTGTATTTTTCAATGGCTCAAAAGATGCATCAATCGTCAATCATCATTCTCATGTCCATTGTGTCGTAATGATCGAATATTGTAA 495 0.3495 MNQILWIPCDILCNCNEITVLDKEANIFLYFSSVPISPNILNQILPKIGEYAEEMVTNNNEGHNMWEIDVTLDVMTYYIEDHEDVEALIAVESLEKVGKDHYSCYYTNQCPICLEEFFNGSKPEHVMTKCFHVFHKECIFQWLKRCINRQSSFSCPLCRNDRIL* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1313 164 Pfam Ring finger domain 108 159 IPR001841 -
Mal6g1313 164 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 159 - -
Mal6g1313 164 SMART ring_2 110 158 IPR001841 -
Mal6g1313 164 ProSiteProfiles Zinc finger RING-type profile. 110 159 IPR001841 -
Mal6g1313 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 160 IPR013083 -
Mal6g1313 164 SUPERFAMILY RING/U-box 109 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1313 Mal-Chr6 23404685 23405179 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1313 107 161 C3H Transcription Factor Family AT4G12190 42.857 1.96e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1313 - K22378 mtr:MTR_5g094680 243.047