Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1310 ATGGATGGTGACATATTGAAAAGTTTGGGAAATGTTGAAAGTAACATGGACATGATGACAATGATGATGCAAATGGAAAAGTTTCCTGATTCATATGAACCTTTTTATAACAACAATAACATTCTCAATCTCAATCTCACCAACAATGATTTCCCTTATGGAAACTCAAATGTAACTTCATCGTTCACACCTTCATTGATCAATCCACCATTGTCTTATCCTCTTCAACAAACAATGACACCCTCACTTCAACCCAACAAAGTTCAAATCCCAACAGGTAGAATACACAATTCTTCATTTTCATCATACCCTGAGAAGAAGAATTCAATGGCAACAATGAGAGAAATGATATTCCGTATGGCGGTTATGCAACCGATTAACATAGACCCCGAAACCATCAAACCACCAAAGAGAAAGAATGTGAAGATTTCAAAAGATCCACAAAGTGTAGCAGCGAGACATAGAAGAGAAAGAATAAGTGAGAGGATAAGGATATTACAAAGATTAGTACCTGGTGGAACAAAAATGGACACAGCTTCTATGTTGGATGAAGCAATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACGTTGGAACAAGTTGGGGCCAATAAACCTTTGAATGTTGTTGGGTTCCCAGGAGGATTGGTTTCTAATGCTAATTTTAATTATTCTTCTTTGCTTAGAGGTTGTTCATCACCTTGTCAAATGGTGGGCCCCACTTCAAAACAAATGCTTAGTTAG 747 0.3668 MDGDILKSLGNVESNMDMMTMMMQMEKFPDSYEPFYNNNNILNLNLTNNDFPYGNSNVTSSFTPSLINPPLSYPLQQTMTPSLQPNKVQIPTGRIHNSSFSSYPEKKNSMATMREMIFRMAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANKPLNVVGFPGGLVSNANFNYSSLLRGCSSPCQMVGPTSKQMLS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1310 248 MobiDBLite consensus disorder prediction 132 154 - -
Mal6g1310 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Mal6g1310 248 MobiDBLite consensus disorder prediction 129 154 - -
Mal6g1310 248 Gene3D - 142 209 IPR036638 GO:0046983
Mal6g1310 248 CDD bHLH_AtIND_like 144 200 - -
Mal6g1310 248 SMART finulus 149 198 IPR011598 GO:0046983
Mal6g1310 248 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 244 IPR045843 GO:0003700|GO:0006355
Mal6g1310 248 PANTHER TRANSCRIPTION FACTOR HEC2 1 244 - -
Mal6g1310 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 202 IPR036638 GO:0046983
Mal6g1310 248 Pfam Helix-loop-helix DNA-binding domain 153 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1310 Mal-Chr6 23337810 23338556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1310 14 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 54.930 1.08e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal6g1310 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1310 - - gmx:100796649 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1310 6 23337810 23338556 Mal6g1310 6 23337810 23338556 ECH