Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1307 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGGATTCCGTGGGATGTTGATACCGAGGGTTTGAAGGAATACATGAGCAAATATGGTGAATTAGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGACGATCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCCAAGGATGTATTGTCCGGTGAACATATTCTTGGTGATAGGATGCTGGAAGTCAAAGTGGCTACACCGAAGGAGGAGATGAGGGCACCAGCCAAAAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACCATCAGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAGATGCATCGTGGAATTGGTTTTATCACTTTCGCAAATGCAGAATCTGTGGAGAATTTGATGTCAGAAACCCATGAACTCGGAGGTTCGGCTGTAGTGGTTGATCGAGCTACACCTAAGGATGACGACATTAAGCCAACTGGCAGAATGTCACATGGAGGATATGGTGCATACAATGCATATATTTCTACAGCAACTAGATATGCAGCACTCGGAGCTCCCACTTTGTATGACCATCCCGGCCCAATTTATGGAAGGGGAGAGCCTCGTCGGAGAATTAGTAAAAAGATTTTTGTTGGTCGTCTCCCCCCAGAAGCAAATTCTGAGGATCTCCGTCAATACTTTGGAAGATTTGGCCGCATAGAAGATGTTTACATTCCCAGAGATCCTAAGAGAACAGGTCACAGGGGTTTTGGGTTTGTTACTTTTGCTGAAGAAGGTGTAGCAGATCGTGTCTCTCTAAGGCCTCATGAGATTTGTGGACACGAGGTGGCAATAGATTCAGCGACACCTGTTGACGATGCTAGGCCCAGTGGAAATTTTATGATGAACAACAATATGGAATCTTTTGGGGGATATGGTGGTCCGGTGCGAAGTTATGGGAGGATGTATGGTGGTTTAGACTATGATGATTGGGGTTATGGAGTTCCCAGTGTGAGGCCATCAAGAGCAGATTATCAAGAGCAGATTGGGAGGCCATCAAGAGCAGATTATCAGGAGCAGATTGGGAGGCCATCAAGAGCAGATTATCAGGAGCATATTGGGAGGCCATCAAGAGCAGATTGGAGGTACAGGCCATACTAG 1191 0.45 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHILGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFANAESVENLMSETHELGGSAVVVDRATPKDDDIKPTGRMSHGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFAEEGVADRVSLRPHEICGHEVAIDSATPVDDARPSGNFMMNNNMESFGGYGGPVRSYGRMYGGLDYDDWGYGVPSVRPSRADYQEQIGRPSRADYQEQIGRPSRADYQEHIGRPSRADWRYRPY* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1307 396 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Mal6g1307 396 Gene3D - 1 85 IPR012677 -
Mal6g1307 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Mal6g1307 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 280 IPR000504 GO:0003723
Mal6g1307 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Mal6g1307 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Mal6g1307 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Mal6g1307 396 Gene3D - 220 305 IPR012677 -
Mal6g1307 396 PANTHER OS01G0945800 PROTEIN 3 396 - -
Mal6g1307 396 SUPERFAMILY RNA-binding domain, RBD 223 324 IPR035979 GO:0003676
Mal6g1307 396 Gene3D - 86 193 IPR012677 -
Mal6g1307 396 MobiDBLite consensus disorder prediction 355 383 - -
Mal6g1307 396 SMART rrm1_1 225 296 IPR000504 GO:0003723
Mal6g1307 396 SMART rrm1_1 5 76 IPR000504 GO:0003723
Mal6g1307 396 SMART rrm1_1 93 164 IPR000504 GO:0003723
Mal6g1307 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Mal6g1307 396 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Mal6g1307 396 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1307 Mal-Chr6 23199127 23206046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1307 6 273 Eukaryotic Initiation Factors Gene Family AT3G16380 24.275 3.25e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1307 K14411 - gmx:100795240 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1307 6 23199127 23206046 Mal6g1307 6 23199127 23206046 ECH