Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1271 ATGTCTCTGGGGAAAATTAACCGGCTAAAGATAGAGAATTTCAAGTCATACAAAGGTTCTCAAATCATCGGTCCCTTCTCCGGCTTCACAGCCATCACTGGCCCTAATGGCGCCGGAAAATCAAACCTAACGGACGCTATCTGCTTCGTTCTCGGCGTTAGAACCATTCACCTCCGTGGTTCTCAGCTAAAGGATCTCATCTACGCCTTCGATGATATAGAGAAACAGCAGAACAAACGCAGTGCCTTGGTTTGCTTGGTTTATCAACTTGCAGACAAATCTGAGATTCAATTTGCAAGAACTATCACTGCCACTGGCGCAAGTCAGTACTTCATCGACGACAATGTGGTTACTTGGGATGTCTACAATGCTAAACTCAAATCCTTTGGCATTCTTGTCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTGGAATCCATTGCATCGAAAAATCCGAAGGAACTTACTTTCCTTTTCGAGCAGATATCTGGCTCGGATGAATTCAAGAGAGAGTACGAGAAGTTTGAAGAAGAAAAAAATTCTGCAGAGGAAAAATCGGCGCTTGTTTATCAGAAGAAAAAGACTATTTTTATGGAGAAAAAGAAGAAGAAAAAACAAAAGAAAGAGGCGGAGGAACATCTTCGGTTGCAAGACGAATTGAAATCTATGAAGAAGGAATGTTTCTTGTGGAAGTTGTTCAATATAGAGAATGATTTTGCTAAAACCACCGAGGAACTTCAAGTTGATAAAACAAGCCGTGAAGGTGTTGGTATAGAAGTAGAAAAATTTGAACATGAAGCCAATGAAAAGGAAAAAGAGCAAGCCAAATATGTTGAAGAGATTAAGCTACTTGAGAAGAAAATAACTGAAAAAAGAAACAAACTTGATGATAAGACTCAACCCGATGTTATCAAGGTAAAGGAGGAAATATCTCGTATCAATTTGAAAATTGAAAAGGGGAAGAAGGAGCTCATCAAAAAAGGTGAAGAGCGAAGGAGGCATGCTGGTGATATAGCAATGCTACAGAATGATATTCGAGATCTTGAGGCGAAAATGATAGACCTACAGGAAAAGGAAAAGGGTCGAAATGTTGGCGGTCAGATTAAGTTAGATGGCAAAGACTTGGAAGAATATTTTAGAATAAAGGAGGAAGTTGGGATAAAAACTGCAAATCTTAGAGCGCAAAAAGAACTTCTTGATGGGCAGCAACATGCTGATGGTGAAGCTCAAAATAATTTGAAAGAAAATCTTCAACAATTAAAAAAGCGGGAGTCAGAGTTGGATTCAAAGGAAAAACAGATGCGAGAAAGGCTTCATAATTCTGCAAAGTATAAGGATGCCCTGGAAAACACGAAGACAGAACTGTGTGTGATGCAGAAAAAACAAAGTGATTTGAAGCGAAAATATGATGAATTGAAGAAACAAATTGATGATGCAGTAAATGAACTACATGAATTGAAAGTTGATAGATATGAAAATGAGAGAGATGCTAAATTGTCTGATGCTGTGGCTACTCTGAAACGCTTGTTTCAAGGAGTCCATGGTCGCATGACTGATCTTTGTACACCAACACAGAAGAAGTATAACTTAGCCGTTACCGTTGCTATGGGAAAATTAATGGACGCAGTTGTTGTTGAGGATGAAAAGACCGCGAAGGAATGCATCAGGTATTTAAAAGAGCTGAGGCGTCCTCCCCAGACATTTATTCCTCTACAATCTATTTGTGTGCAGGAAATAAACGAAGAATTACGCTCGTTAGGGGGTACTTCAAAACTGGTTTTTGATGTGGTTAAGTTTGATCCTTCCTTGGAGAGGGCAATTCTCTTTGCTGTTGGGAACACTCTTGTTTGTGAAGATCTGGAGGAGGCCAAAATTGTTAGCTGGACTGGCAAGAGGTTAACAGTTGTAACTGTGGACGGAATTCTGCTGACAAAATCTGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAAAAGTGGGATGCCAAGACATATGAAGAAATTGTCAAGAAGAAAGAGCAGTGTGAATCGGAGTTGGAAGAGCTAGGATCAATTAGAGATATGCACTGTATTGAAGTGTCTGAAGCAGAGAGGAAAATTAGTGGTCTCGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCAAAGCATTGAAAAAAAGCTTTTAACATTGAGTGAAGACAAGGGGACTATCAAAAAAGAAATTGAACGCATTAGTCCAGAACTGAGCAAGTTAAGAGACGCTGTTGAAAAGAGAAAAACAGAAATATGCGTGCTTGAGAAGAGTATCAATGAAATCACGGATGAGATGTACAAAGACTTCAGCAAGTCGGTTGGGGTTGCAAACATTCGCGAGTATGAAGAAAATCGACTCAAGGCTTCTCAAAATGCAGCAGAGGAGAGACTGAACCTGAATAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGTTCACGAATTCAAGAGTTGGAATCTTCGCTGAGTGCTTTAAAGAATGATTTGAAGCGGGTACAGAACAAAGAGGCTGAAGCAAAGTTAGCAGTGGAGAATGCTACAGAAGAGATCAATCAGTTGAAGGATGAAAATAAAGAGTTGAAATCCAAGTCAGAGGATTGTGAAAAGGAAATTCACGAATGGAAGAAGAGTGCTATTGCCGCCAAAACAAACTTATCCAAACTTAATCATCAGATAAAGTCAAAGGAGGAACGGATTGAGCGGTTGATGGTGGAAAAGCAGGAAATAATAGAGAAGTGTGAGATGGAGCAGATTAGACTTCCAATCATATTAGATCCAATGGATACCGACGATAGCTCAACCGGTCCAGTTTTAGACTTTGATGAGCTCAGTAGGACATTAAAAAATAGGAGACACTCTGACAGGGATACAATAGAGGTAGAATGCAAGCAAAAAATGGATGCATTGATGTCTAAGATCAAAAGAACAGCACCAAATTTGAAGGCATTGGATCAGTATGATGCGCTGGTTGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCCGTCATGAAAGAAGCGAAGGAAAAAACAGATAGATTCAATGCGGTTAAGCAGAAGAGATACGATTTGTTCATGGATGCTTTCAACCATATATCTAGTAATATAGATAAAATCTATAAACAACTTACAATGAGCAACACACATCTGCTTAGTGGAACAGCATACCTATATTTGGAAAACGAAGACGATCCATTTCAAAATGGCATCAAATACACTGCTATGCCTCCCACAAAGGCATTCTACGACATAGATCAACTTTCTGGTGGCGAAAAGACAGTTGCTGCGCTTGCGTTGCTATTCACTATTCATAGCTATAAGCCTTCACCATTTTTCATACTCGATGAAGTTGATGCTGCATTGGACAACTTGAATGTCGCGAAAGTTGCTAGATTTATTCGTTCAAAATCTTGTGAAGGAGCGAGGGCTAATCAAGATACCGATGATGGAAATGGTTTTCAAATAATTCAAATATCACAGAAAGATCACTTCTATGATAAAGCTGAAGTGTTAATTGGGGTTTGCAGGGACTCTAAAAGTGGCAGTTCGAGAACTCTCTCACTTGATCTCACTAAATATCGGGATTCCTAA 3642 0.3946 MSLGKINRLKIENFKSYKGSQIIGPFSGFTAITGPNGAGKSNLTDAICFVLGVRTIHLRGSQLKDLIYAFDDIEKQQNKRSALVCLVYQLADKSEIQFARTITATGASQYFIDDNVVTWDVYNAKLKSFGILVKARNFLVFQGDVESIASKNPKELTFLFEQISGSDEFKREYEKFEEEKNSAEEKSALVYQKKKTIFMEKKKKKKQKKEAEEHLRLQDELKSMKKECFLWKLFNIENDFAKTTEELQVDKTSREGVGIEVEKFEHEANEKEKEQAKYVEEIKLLEKKITEKRNKLDDKTQPDVIKVKEEISRINLKIEKGKKELIKKGEERRRHAGDIAMLQNDIRDLEAKMIDLQEKEKGRNVGGQIKLDGKDLEEYFRIKEEVGIKTANLRAQKELLDGQQHADGEAQNNLKENLQQLKKRESELDSKEKQMRERLHNSAKYKDALENTKTELCVMQKKQSDLKRKYDELKKQIDDAVNELHELKVDRYENERDAKLSDAVATLKRLFQGVHGRMTDLCTPTQKKYNLAVTVAMGKLMDAVVVEDEKTAKECIRYLKELRRPPQTFIPLQSICVQEINEELRSLGGTSKLVFDVVKFDPSLERAILFAVGNTLVCEDLEEAKIVSWTGKRLTVVTVDGILLTKSGTMTGGTSGGMEARSKKWDAKTYEEIVKKKEQCESELEELGSIRDMHCIEVSEAERKISGLEKKIQYAEIEKQSIEKKLLTLSEDKGTIKKEIERISPELSKLRDAVEKRKTEICVLEKSINEITDEMYKDFSKSVGVANIREYEENRLKASQNAAEERLNLNSQLSKLKYQLEYEQNRDMSSRIQELESSLSALKNDLKRVQNKEAEAKLAVENATEEINQLKDENKELKSKSEDCEKEIHEWKKSAIAAKTNLSKLNHQIKSKEERIERLMVEKQEIIEKCEMEQIRLPIILDPMDTDDSSTGPVLDFDELSRTLKNRRHSDRDTIEVECKQKMDALMSKIKRTAPNLKALDQYDALVEKERAVTEEFEAVMKEAKEKTDRFNAVKQKRYDLFMDAFNHISSNIDKIYKQLTMSNTHLLSGTAYLYLENEDDPFQNGIKYTAMPPTKAFYDIDQLSGGEKTVAALALLFTIHSYKPSPFFILDEVDAALDNLNVAKVARFIRSKSCEGARANQDTDDGNGFQIIQISQKDHFYDKAEVLIGVCRDSKSGSSRTLSLDLTKYRDS* 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1271 1213 Gene3D - 573 655 - -
Mal6g1271 1213 CDD ABC_SMC1_euk 6 153 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Mal6g1271 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 892 1196 IPR027417 -
Mal6g1271 1213 Coils Coil 825 929 - -
Mal6g1271 1213 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 5 1212 - -
Mal6g1271 1213 Coils Coil 166 193 - -
Mal6g1271 1213 Coils Coil 788 808 - -
Mal6g1271 1213 Coils Coil 1007 1027 - -
Mal6g1271 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 329 IPR027417 -
Mal6g1271 1213 Gene3D - 493 572 - -
Mal6g1271 1213 Coils Coil 698 725 - -
Mal6g1271 1213 Coils Coil 332 359 - -
Mal6g1271 1213 Pfam RecF/RecN/SMC N terminal domain 6 1194 IPR003395 -
Mal6g1271 1213 Coils Coil 254 295 - -
Mal6g1271 1213 Coils Coil 201 227 - -
Mal6g1271 1213 Pfam SMC proteins Flexible Hinge Domain 512 626 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal6g1271 1213 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1212 - -
Mal6g1271 1213 Gene3D - 944 1212 IPR027417 -
Mal6g1271 1213 Gene3D - 3 226 IPR027417 -
Mal6g1271 1213 SUPERFAMILY Smc hinge domain 473 677 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal6g1271 1213 PIRSF SMC 4 1211 IPR024704 GO:0005524|GO:0016887
Mal6g1271 1213 Coils Coil 463 490 - -
Mal6g1271 1213 SMART SMC_hinge_2 512 628 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal6g1271 1213 Coils Coil 411 438 - -
Mal6g1271 1213 Coils Coil 670 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1271 Mal-Chr6 22570861 22574623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1271 4 111 Structural Maintenance of Chromosomes family AT5G61460 33.898 2.47e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1271 K06636 - gmx:100791953 1637.08