Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1191 ATGGCCTTAGATCAGTACATGGACGAGACCGCATTCCAAAACGATTCCTTTGAAGATAAATCATCTCTAAAAAATTGTAAATCCTCCACAAATATTTTGGCAGATTCTGATAAAAAGGCATCTGGTGATTTTGACTGCAACATATGCCTGGATTGTGTTCAAGATCCAGTAGTCACTCTTTGTGGTCATCTTTACTGCTGGCCTTGCATTTATAAATGGCTACAAATACAAACTAGTGTCACTTCCGAAAACGAGAAGCAGGAGCCACAATGTCCGGTATGCAAATCAGAACTCTCTCAATCTTCCCTAGTTCCATTATACGGCCGTGGCCAAACCACTACAACTTCCGAAGGCAAGGCTCAGGCTCATCAGGCAGGAATTGTCGTACCCCGAAGACCTTCGGGTCCCCGATCATATAATGCTACAACTGTTTCCCAACCTACTTATCAAAGTTATCACCATCCTCATCATTCTTATCATCCTCGGCAATTGCAATTCAACTCAATTCCTAGCAGTTACCCGTCACCGATGTTTAGCACAAGTGGTTCATCACTAGACAACACATATGGAATCTTTGGTGAGATGATATATGCAAGGATGTTTGGTAACCAGGTGGAAAACATGTATACATATCCTAATTCATATAGTTATCAAGGGAACAATAATCCAAGGATGAGAAGACATTTAATTCAAGTTGATAAGTCCCTCAGCAGAATCTGTTTTTTCCTACTTTGCTGCTTAGTTTTGTGCCTTCTCTTATTCTGA 765 0.4078 MALDQYMDETAFQNDSFEDKSSLKNCKSSTNILADSDKKASGDFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLQIQTSVTSENEKQEPQCPVCKSELSQSSLVPLYGRGQTTTTSEGKAQAHQAGIVVPRRPSGPRSYNATTVSQPTYQSYHHPHHSYHPRQLQFNSIPSSYPSPMFSTSGSSLDNTYGIFGEMIYARMFGNQVENMYTYPNSYSYQGNNNPRMRRHLIQVDKSLSRICFFLLCCLVLCLLLF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1191 254 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Mal6g1191 254 MobiDBLite consensus disorder prediction 109 139 - -
Mal6g1191 254 SUPERFAMILY RING/U-box 42 107 - -
Mal6g1191 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 254 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mal6g1191 254 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Mal6g1191 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 254 - -
Mal6g1191 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 114 IPR013083 -
Mal6g1191 254 SMART ring_2 46 94 IPR001841 -
Mal6g1191 254 CDD RING-HC_AtRMA_like 44 96 - -
Mal6g1191 254 Pfam RING-type zinc-finger 46 92 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1191 Mal-Chr6 19357334 19358098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1191 40 254 C3H Transcription Factor Family AT4G28270 39.091 8.36e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1191 K10666 - gmx:100785491 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1191 6 19357334 19358098 Mal6g1191 6 19357334 19358098 ECH