Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1180 ATGGGTGCTCTTCAGTTCACACTTCTCCACTTGATTTTATTACATTCATTCAACATTGTTGCTTACAAGGATCAAGAATGGAAGAAAGCCACTGCAACTTATGCCAAAGACACAGAGGGATCTCTGATTACAGAAGGAGCTTGTGGTTATGGAGATCTCCACAAAGCTAGCTATGGAAAACATAGTGTTGGATTGAGTACAATTTTGTTCAACAGAGTTGATTATGGTGGTTGGTGTAACTTTCCAAGAGAACATTTTGAGGTTTCACTGGCTGCATTTGCTGAAATTGCCAAGGGGAAAGCTGATATTATTCCCGTTCAATATAGAAGAGTGAAGTGTGAAAGAAGTGGTGGGTTGAAATTCACAATGAGTGGGAGTTCTCATTTCTATCAAGTTTTGATAACTAATGTGGGGTTAGATGGTGAAGTTTATGCTGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCAATGGCAAGGAATTGGGGAATGAATTGGCATTGCAATGTCAACCTTCAACATCAGCCTTTGTCGTTTGAGGTAACCAGCAGCACTGGAAAAACACTCACATCTTACAATGTAGCACCTTCAAACTGGCAATTTGGACAAACATTTCAAGGAAAACAATTTTAG 633 0.3965 MGALQFTLLHLILLHSFNIVAYKDQEWKKATATYAKDTEGSLITEGACGYGDLHKASYGKHSVGLSTILFNRVDYGGWCNFPREHFEVSLAAFAEIAKGKADIIPVQYRRVKCERSGGLKFTMSGSSHFYQVLITNVGLDGEVYAVKVKGSRTGWIPMARNWGMNWHCNVNLQHQPLSFEVTSSTGKTLTSYNVAPSNWQFGQTFQGKQF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1180 210 Gene3D - 118 210 IPR036749 -
Mal6g1180 210 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 128 207 IPR007117 -
Mal6g1180 210 SUPERFAMILY Barwin-like endoglucanases 26 136 IPR036908 -
Mal6g1180 210 Pfam Expansin C-terminal domain 120 196 IPR007117 -
Mal6g1180 210 SMART dpbb_1 33 108 IPR007112 -
Mal6g1180 210 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 118 IPR007112 -
Mal6g1180 210 PANTHER EXPANSIN-A20 74 210 - -
Mal6g1180 210 PANTHER EXPANSIN-A20 3 72 - -
Mal6g1180 210 SUPERFAMILY PHL pollen allergen 115 207 IPR036749 -
Mal6g1180 210 Gene3D - 13 76 IPR036908 -
Mal6g1180 210 Gene3D - 77 114 IPR036908 -
Mal6g1180 210 PANTHER EXPANSIN-A15 3 72 IPR002963 GO:0009664
Mal6g1180 210 PANTHER EXPANSIN-A15 74 210 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1180 Mal-Chr6 18569360 18570570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1180 9 210 Expansin Gene Family AT4G38210 51.837 4.13e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1180 - - gmx:100804002 365.925